Bioconductor Low count genes

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deseq2 low count genes independent filtering

updated 7.3 years ago by hs.lansdell ▴ 20 • written 7.3 years ago by pablo_garcia05 ▴ 20

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deseq2 low count genes

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by hs.lansdell ▴ 20

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Comment: Question about using LRT test for time course experiments with DESeq2 by Rob • 0

Just to pick up on this thread as its really helpful for understanding the LRT test. The LRT test is given any genes that change within the…

Comment: Support of parquet files for on-disk Bioconductor objects by btom66245 • 0

@[doodle jump][1] I encountered the exact same problem on both Mac and Windows. Thank you for your sharing. [1]: https://doodlejump24.…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

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