Bioconductor Low count genes

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deseq2 low count genes independent filtering

updated 7.2 years ago by hs.lansdell ▴ 20 • written 7.2 years ago by pablo_garcia05 ▴ 20

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deseq2 low count genes

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by hs.lansdell ▴ 20

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Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

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Comment: Weird p-values using DESeq2?

Answer: Store Matrix in DataFrame Cell

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