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lpe
•
reset
0
votes
3
replies
2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
18.2 years ago
McGee, Monnie
▴ 300
0
votes
18
replies
2.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
affylmGUI
Cancer
gcrma
LPE
affylmGUI
updated 15.5 years ago by
Charlie Whittaker
▴ 70 • written 15.5 years ago by
Wolfgang Huber
★ 13k
0
votes
7
replies
1.7k
views
Statistical comparison of low replicate affy data
affy
gcrma
siggenes
LPE
affy
gcrma
siggenes
LPE
20.2 years ago
Matthew Hannah
▴ 940
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
1
reply
1.2k
views
problem with LPE
LPE
LPE
updated 20.2 years ago by
Nitin Jain
▴ 30 • written 20.2 years ago by
Phguardiol@aol.com
▴ 720
0
votes
1
reply
1.1k
views
Help with LPE error message
LPE
LPE
updated 19.1 years ago by
Jain, Nitin
▴ 70 • written 19.1 years ago by
Puhong Gao
▴ 140
0
votes
2
replies
1.1k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
Cancer
gcrma
LPE
updated 15.5 years ago by
Patrick Aboyoun
★ 1.6k • written 15.5 years ago by
Charlie Whittaker
▴ 70
0
votes
0
replies
1.0k
views
LPE error and warnings
LPE
LPE
19.5 years ago
Stephanie Mewborn
▴ 40
0
votes
1
reply
1.0k
views
LPE errors
LPE
LPE
updated 19.4 years ago by
Jain, Nitin
▴ 70 • written 19.4 years ago by
Stephanie Mewborn
▴ 40
0
votes
1
reply
983
views
FDR adjustment in LPE
LPE
LPE
updated 19.0 years ago by
Jain, Nitin
▴ 70 • written 19.0 years ago by
jean-louis.ruelle@gskbio.com
▴ 40
0
votes
1
reply
960
views
Limma or something else ? plus Normalization question
limma
LPE
PROcess
limma
LPE
PROcess
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
Phguardiol@aol.com
▴ 720
0
votes
0
replies
948
views
Limma or something else ? plus Normalization question
Normalization
affy
limma
LPE
PROcess
Normalization
affy
limma
LPE
PROcess
20.6 years ago
Gordon Smyth
50k
0
votes
1
reply
946
views
local pooled error
LPE
LPE
updated 19.1 years ago by
A.J. Rossini
▴ 210 • written 19.1 years ago by
Lana Schaffer
★ 1.3k
0
votes
0
replies
905
views
PLPE error
Microarray
affy
LPE
PLPE
Microarray
affy
LPE
PLPE
15.3 years ago
Dennis.Burian@faa.gov
▴ 90
0
votes
0
replies
904
views
question about RMA and filtering
affy
LPE
affy
LPE
20.8 years ago
Phguardiol@aol.com
▴ 720
0
votes
0
replies
877
views
incoherence with LPE
LPE
LPE
18.7 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
860
views
LPE method based on RMA vs. MAS5
Preprocessing
LPE
Preprocessing
LPE
18.7 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
852
views
LPE question
LPE
LPE
18.2 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
846
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.1 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
829
views
pools and tech rep
limma
LPE
limma
LPE
18.9 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
814
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.2 years ago
Harry Hurd
▴ 60
0
votes
0
replies
769
views
A friendly mention of LPE package
LPE
LPE
16.2 years ago
pingzhao Hu
▴ 210
22 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Popular Question
to
Ian D.
▴ 70
Popular Question
to
junhui.li11
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