Showing : maanova • reset
0
votes
0
replies
820
views
multicore version of maanova
maanova maanova
10.6 years ago Guest User ★ 13k
0
votes
5
replies
4.6k
views
Statistical power of limma vs mixed model approach to analyze microarray and differentialproteomics/peptidomics experiments and Poisson/binomial mixe…
limma maanova rnaseq
10.9 years ago • updated 2.4 years ago Gordon Smyth 50k
0
votes
0
replies
1.7k
views
R / Maanova: contrasts for interaction in model with 2 fixed factors
maanova maanova
12.0 years ago V. Oostra ▴ 30
0
votes
0
replies
704
views
Cross-comparison of independent intensities from different experiments (genepix) (sorry I don\'t know how to describe the problem better)
limma maanova limma maanova
12.3 years ago James W. MacDonald 65k
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
0
votes
0
replies
749
views
R/BioC/Mac keeps going and going
maanova maanova
14.1 years ago Loren Engrav ★ 1.0k
0
votes
0
replies
914
views
[MAANOVA] Contrasts for interaction levels - possible?
maanova maanova
14.1 years ago boczniak767 ▴ 720
0
votes
3
replies
1.5k
views
[MAANOVA] Warnings in fitmaanova & information request
maanova oligo maanova oligo
14.2 years ago boczniak767 ▴ 720
0
votes
0
replies
997
views
Loop design - biological, technical replication
limma maanova limma maanova
14.2 years ago boczniak767 ▴ 720
0
votes
0
replies
1.2k
views
manova contrast.matrix
maanova maanova
14.4 years ago David ▴ 860
0
votes
0
replies
779
views
To bioinformatics and maanova expert
PROcess maanova PROcess maanova
14.8 years ago Loren Engrav ★ 1.0k
0
votes
0
replies
865
views
Ignore maanova warning messages?
maanova maanova
14.8 years ago Loren Engrav ★ 1.0k
0
votes
0
replies
812
views
What does maanova contrast?
maanova maanova
14.8 years ago Loren Engrav ★ 1.0k
0
votes
3
replies
1.0k
views
Warning serious?
maanova maanova
updated 14.8 years ago by ▴ 130 • written 14.8 years ago by ★ 1.0k
0
votes
0
replies
817
views
Commands with maanova
Regression maanova Regression maanova
14.9 years ago Loren Engrav ★ 1.0k
0
votes
2
replies
919
views
Filter before? Filter after? With maanova
Regression probe maanova Regression probe maanova
updated 14.9 years ago by ★ 5.5k • written 14.9 years ago by ★ 1.0k
0
votes
2
replies
2.9k
views
Random effects and variance components (was: Yet another nested design in limma)
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
updated 14.9 years ago by 65k • written 14.9 years ago by ▴ 320
0
votes
2
replies
2.7k
views
Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
updated 15.0 years ago by ▴ 320 • written 15.0 years ago by 50k
0
votes
0
replies
1.1k
views
Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
15.0 years ago Paolo Innocenti ▴ 320
0
votes
1
reply
1.1k
views
No degree of freedom in maanova
maanova maanova
15.2 years ago Marcelo Laia ▴ 450
0
votes
0
replies
950
views
error with get(getOption("device")) in maanova with R 2.8.0
GO maanova GO maanova
15.5 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.3k
views
error with get(getOption("device")) in maanova with R 2.8.0
Kidney maanova Kidney maanova
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 20
0
votes
2
replies
950
views
Does old workspace work?
Regression probe gcrma PROcess maanova Regression probe gcrma PROcess maanova
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ★ 1.0k
0
votes
2
replies
1.1k
views
Maanova & createdata
Regression maanova Regression maanova
updated 15.5 years ago by ▴ 450 • written 15.5 years ago by ★ 1.0k
0
votes
0
replies
985
views
F tests of covariates in maanova
maanova maanova
15.7 years ago Kristen K Dang ▴ 50
0
votes
2
replies
1.4k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 15.7 years ago by ▴ 220 • written 15.7 years ago by ★ 7.2k
0
votes
9
replies
1.7k
views
GO over representation analysis
Annotation GO maanova Annotation GO maanova
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 310
0
votes
1
reply
911
views
How to extract log ratios from two color arrays
GO hgu133a maanova GO hgu133a maanova
15.7 years ago Heike Pospisil ▴ 310
0
votes
0
replies
758
views
Microarray analysis question
Microarray Normalization affy limma convert maanova Microarray Normalization affy limma
15.9 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
949
views
MAANOVA - how to collapse replicate spots
Genetics maanova Genetics maanova
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 110
0
votes
0
replies
904
views
[SOLVED] Factorial experiment: No degree of freedom in maanova
maanova maanova
16.2 years ago Marcelo Laia ▴ 450
0
votes
3
replies
1.1k
views
Factorial experiment: No degree of freedom in maanova
maanova maanova
updated 16.2 years ago by ▴ 450 • written 16.2 years ago by ★ 6.0k
0
votes
0
replies
782
views
Factorial experiment: No degree of freedom in maanova
maanova maanova
16.2 years ago Marcelo Laia ▴ 450
0
votes
0
replies
820
views
2 conditions time series with different number of sample at each time point
TimeCourse limma timecourse maanova TimeCourse limma timecourse maanova
16.3 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
980
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 510
0
votes
1
reply
940
views
Needed help on maanova fitmaanova function
affy vsn limma maanova affyio affy vsn limma maanova affyio
16.8 years ago Marcelo Laia ▴ 450
0
votes
0
replies
665
views
MAANOVA help
maanova maanova
16.8 years ago Alessandro Fazio ▴ 70
0
votes
1
reply
874
views
Options for spatial normalization?
Normalization maanova Normalization maanova
updated 17.2 years ago by ▴ 80 • written 17.2 years ago by ▴ 30
0
votes
0
replies
1.1k
views
limma vs. maanova for expirement with both contrasts and continuous variables
limma maanova BAC limma maanova BAC
17.3 years ago Gordon Smyth 50k
0
votes
0
replies
781
views
maanova: missing observations in cov/cor
maanova maanova
17.7 years ago Matthew Vaughn ▴ 30
1
vote
1
reply
1.5k
views
adjPval and qvalue
qvalue maanova qvalue maanova
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 220
0
votes
4
replies
1.4k
views
valcano plot x-values
maanova maanova
updated 18.1 years ago by 65k • written 18.2 years ago by ▴ 220
0
votes
1
reply
864
views
diagnostics
Genetics limma maanova Genetics limma maanova
18.3 years ago alex lam RI ▴ 310
0
votes
0
replies
1.2k
views
affymetrix in maanova, code
qvalue maanova qvalue maanova
18.4 years ago Morten ▴ 300
0
votes
4
replies
1.1k
views
Using MAANOVA functions
Microarray maanova Microarray maanova
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ▴ 10
0
votes
0
replies
1.1k
views
R/maanova
Microarray affy limma maanova Microarray affy limma maanova
18.4 years ago Gary Churchill ▴ 10
0
votes
3
replies
1.4k
views
Limma vs Maanova, and use of covariates
limma maanova limma maanova
18.4 years ago Ingunn Berget ▴ 150
0
votes
1
reply
1.3k
views
limma(B) and maanova(La.svd) questions
limma maanova limma maanova
18.6 years ago Aurélie Laugraud ▴ 20
0
votes
0
replies
754
views
maanova error
maanova maanova
18.7 years ago Georg Otto ▴ 510
0
votes
0
replies
774
views
limma_design_matrix.
maanova maanova
19.9 years ago Gordon Smyth 50k
50 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma by Gordon Smyth 50k
No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
Awards • All
Popular Question to neilzhao ▴ 30
Popular Question to ATpoint ★ 4.1k
Teacher to Michael Love 42k
Popular Question to Haibo Liu • 0
Popular Question to HS ▴ 10
Locations • All
Wageningen University, Wageningen, the Netherlands, 2 minutes ago
United States, 8 minutes ago
Hong Kong, 30 minutes ago
Germany, 54 minutes ago
Germany, 1 hour ago
Traffic: 601 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6