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Showing :
maanova
•
reset
0
votes
5
replies
4.6k
views
Statistical power of limma vs mixed model approach to analyze microarray and differentialproteomics/peptidomics experiments and Poisson/binomial mixe…
limma
maanova
rnaseq
10.9 years ago • updated 2.4 years ago
Gordon Smyth
50k
0
votes
2
replies
2.9k
views
Random effects and variance components (was: Yet another nested design in limma)
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
updated 14.9 years ago by
James W. MacDonald
65k • written 14.9 years ago by
Paolo Innocenti
▴ 320
0
votes
2
replies
2.7k
views
Yet another nested design in limma
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
updated 15.0 years ago by
Paolo Innocenti
▴ 320 • written 15.0 years ago by
Gordon Smyth
50k
0
votes
0
replies
1.7k
views
R / Maanova: contrasts for interaction in model with 2 fixed factors
maanova
maanova
12.0 years ago
V. Oostra
▴ 30
0
votes
9
replies
1.7k
views
GO over representation analysis
Annotation
GO
maanova
Annotation
GO
maanova
updated 15.7 years ago by
Marc Carlson
★ 7.2k • written 15.7 years ago by
Heike Pospisil
▴ 310
1
vote
1
reply
1.5k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 18.1 years ago by
James W. MacDonald
65k • written 18.1 years ago by
sabrina.shao
▴ 220
0
votes
3
replies
1.5k
views
[MAANOVA] Warnings in fitmaanova & information request
maanova
oligo
maanova
oligo
14.2 years ago
boczniak767
▴ 720
0
votes
3
replies
1.4k
views
Limma vs Maanova, and use of covariates
limma
maanova
limma
maanova
18.4 years ago
Ingunn Berget
▴ 150
0
votes
4
replies
1.4k
views
valcano plot x-values
maanova
maanova
updated 18.1 years ago by
James W. MacDonald
65k • written 18.2 years ago by
sabrina.shao
▴ 220
0
votes
2
replies
1.4k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 15.7 years ago by
Kort, Eric
▴ 220 • written 15.7 years ago by
Marc Carlson
★ 7.2k
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 12.5 years ago by
Nicholas Lewin-Koh
▴ 430 • written 12.5 years ago by
Kurt Hornik
▴ 10
0
votes
1
reply
1.3k
views
limma(B) and maanova(La.svd) questions
limma
maanova
limma
maanova
18.6 years ago
Aurélie Laugraud
▴ 20
0
votes
1
reply
1.3k
views
error with get(getOption("device")) in maanova with R 2.8.0
Kidney
maanova
Kidney
maanova
updated 15.5 years ago by
Wolfgang Huber
★ 13k • written 15.5 years ago by
Rob Tempelman
▴ 20
0
votes
0
replies
1.2k
views
manova contrast.matrix
maanova
maanova
14.4 years ago
David
▴ 860
0
votes
2
replies
1.2k
views
Coercing Normalized Data to exprSet
Biobase
PROcess
maanova
Biobase
PROcess
maanova
21.3 years ago
Barry Henderson
▴ 250
0
votes
6
replies
1.2k
views
maanova background correction
maanova
maanova
updated 20.9 years ago by
James W. MacDonald
65k • written 20.9 years ago by
Brendan M. Heavey
▴ 20
0
votes
0
replies
1.2k
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
18.4 years ago
Morten
▴ 300
0
votes
0
replies
1.1k
views
R/maanova
Microarray
affy
limma
maanova
Microarray
affy
limma
maanova
18.4 years ago
Gary Churchill
▴ 10
0
votes
3
replies
1.1k
views
Factorial experiment: No degree of freedom in maanova
maanova
maanova
updated 16.2 years ago by
Marcelo Laia
▴ 450 • written 16.2 years ago by
Naomi Altman
★ 6.0k
0
votes
2
replies
1.1k
views
Maanova & createdata
Regression
maanova
Regression
maanova
updated 15.5 years ago by
Marcelo Laia
▴ 450 • written 15.5 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
1.1k
views
Yet another nested design in limma
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
15.0 years ago
Paolo Innocenti
▴ 320
0
votes
1
reply
1.1k
views
No degree of freedom in maanova
maanova
maanova
15.2 years ago
Marcelo Laia
▴ 450
0
votes
4
replies
1.1k
views
Using MAANOVA functions
Microarray
maanova
Microarray
maanova
updated 18.4 years ago by
Xiangqin Cui
▴ 20 • written 18.4 years ago by
Heather Maughan
▴ 10
0
votes
0
replies
1.1k
views
limma vs. maanova for expirement with both contrasts and continuous variables
limma
maanova
BAC
limma
maanova
BAC
17.3 years ago
Gordon Smyth
50k
0
votes
3
replies
1.0k
views
Warning serious?
maanova
maanova
updated 14.8 years ago by
Juan Pedro Steibel
▴ 130 • written 14.8 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
997
views
Loop design - biological, technical replication
limma
maanova
limma
maanova
14.2 years ago
boczniak767
▴ 720
0
votes
0
replies
985
views
F tests of covariates in maanova
maanova
maanova
15.7 years ago
Kristen K Dang
▴ 50
0
votes
1
reply
980
views
error in maanova matest() with affymetrix
cdf
affy
maanova
affyio
cdf
affy
maanova
affyio
updated 16.7 years ago by
James W. MacDonald
65k • written 16.7 years ago by
Georg Otto
▴ 510
0
votes
2
replies
950
views
Does old workspace work?
Regression
probe
gcrma
PROcess
maanova
Regression
probe
gcrma
PROcess
maanova
updated 15.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.5 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
950
views
error with get(getOption("device")) in maanova with R 2.8.0
GO
maanova
GO
maanova
15.5 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
949
views
MAANOVA - how to collapse replicate spots
Genetics
maanova
Genetics
maanova
updated 16.0 years ago by
Marcelo Laia
▴ 450 • written 16.0 years ago by
Cecilia McGregor
▴ 110
0
votes
1
reply
940
views
Needed help on maanova fitmaanova function
affy
vsn
limma
maanova
affyio
affy
vsn
limma
maanova
affyio
16.8 years ago
Marcelo Laia
▴ 450
0
votes
2
replies
918
views
Filter before? Filter after? With maanova
Regression
probe
maanova
Regression
probe
maanova
updated 14.9 years ago by
rgentleman
★ 5.5k • written 14.9 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
914
views
[MAANOVA] Contrasts for interaction levels - possible?
maanova
maanova
14.1 years ago
boczniak767
▴ 720
0
votes
1
reply
911
views
How to extract log ratios from two color arrays
GO
hgu133a
maanova
GO
hgu133a
maanova
15.7 years ago
Heike Pospisil
▴ 310
0
votes
0
replies
904
views
[SOLVED] Factorial experiment: No degree of freedom in maanova
maanova
maanova
16.2 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
874
views
Options for spatial normalization?
Normalization
maanova
Normalization
maanova
updated 17.2 years ago by
Jay Konieczka
▴ 80 • written 17.2 years ago by
Oliver R. Homann
▴ 30
0
votes
0
replies
865
views
Ignore maanova warning messages?
maanova
maanova
14.8 years ago
Loren Engrav
★ 1.0k
0
votes
1
reply
864
views
diagnostics
Genetics
limma
maanova
Genetics
limma
maanova
18.3 years ago
alex lam RI
▴ 310
0
votes
0
replies
820
views
multicore version of maanova
maanova
maanova
10.6 years ago
Guest User
★ 13k
0
votes
0
replies
820
views
2 conditions time series with different number of sample at each time point
TimeCourse
limma
timecourse
maanova
TimeCourse
limma
timecourse
maanova
16.3 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
817
views
Commands with maanova
Regression
maanova
Regression
maanova
14.9 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
812
views
What does maanova contrast?
maanova
maanova
14.8 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
782
views
Factorial experiment: No degree of freedom in maanova
maanova
maanova
16.2 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
781
views
maanova: missing observations in cov/cor
maanova
maanova
17.7 years ago
Matthew Vaughn
▴ 30
0
votes
0
replies
779
views
To bioinformatics and maanova expert
PROcess
maanova
PROcess
maanova
14.8 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
774
views
limma_design_matrix.
maanova
maanova
19.9 years ago
Gordon Smyth
50k
0
votes
1
reply
761
views
maanova rss for null model
maanova
maanova
updated 20.9 years ago by
James W. MacDonald
65k • written 20.9 years ago by
Brendan M. Heavey
▴ 20
0
votes
0
replies
758
views
Microarray analysis question
Microarray
Normalization
affy
limma
convert
maanova
Microarray
Normalization
affy
limma
15.9 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
754
views
maanova error
maanova
maanova
18.7 years ago
Georg Otto
▴ 510
50 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 results
by
swbarnes2
★ 1.3k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Votes
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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