Bioconductor Mean

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3.2k

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R ROC mean plot multiple roc curves

updated 6.2 years ago by chris86 ▴ 420 • written 6.2 years ago by sap940 • 0

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1.4k

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limma mean sd

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by mheydarpour ▴ 10

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920

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Mean R

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by kritikamish99 ▴ 10

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2.1k

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deseq2 mean

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by asd • 0

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1.8k

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granges Rle coverage View mean

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Christian Ruckert ▴ 170

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957

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mean standard deviation

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by vinod.acear ▴ 50

6 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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