Bioconductor Methylsig

Showing : methylsig • reset

1

vote

3

replies

3.0k

views

methylSig bsseq

updated 3.1 years ago by Peter Hickey ▴ 760 • written 3.1 years ago by carla.geiger • 0

0

votes

0

replies

982

views

methylsig no replicates dmr

7.2 years ago nilaycan • 0

2 results • Page 1 of 1

Recent ...

Replies

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

R-4.5.1 is compatible with both release and devel versions of Bioconductor. Which one are you using? I am still on release, and it's fine: …

Votes

Answer: DESeq2 design for haplotype MPRA

Comment: Check removeBatchEffect effectiveness

Awards • All