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no replicates
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0
votes
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480
views
MethylSig is not giving DMRs with no replicates
methylsig
no replicates
dmr
4.5 years ago
nilaycan
• 0
1
vote
5
replies
2.0k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 4.7 years ago by
Michael Love
39k • written 4.7 years ago by
Tony
• 0
3
votes
9
replies
8.3k
views
DESeq2, no replicate
deseq2
no replicates
high p-adj values
updated 6 months ago by
Michael Love
39k • written 5.3 years ago by
Mahtetie
• 0
4
votes
8
replies
1.3k
views
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
rnaseq
edger
DGE
no replicates
5.5 years ago
Stefany Solano
• 0
2
votes
1
reply
925
views
diffHiC with no biological replicates?
diffhic
estimate dispersion value
glm
no replicates
deseq
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
hwick1
▴ 20
5
votes
7
replies
3.8k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
5.9 years ago
BioinfGuru
▴ 20
6 results • Page
1 of 1
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Replies
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
How can I draw a barplot of complexheatmap according 'Tumor Type'
on which data type limma::removeBatchEffect can be applyed?
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
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