Biostar No replicates

Showing : no replicates • reset

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350

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methylsig no replicates dmr

3.5 years ago nilaycan • 0

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1.2k

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deseq2 without replicate no replicates

updated 3.7 years ago by Michael Love 35k • written 3.7 years ago by Tony • 0

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6.2k

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deseq2 no replicates high p-adj values

updated 4.3 years ago by johnmcma ▴ 10 • written 4.3 years ago by Mahtetie • 0

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1.1k

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rnaseq edger DGE no replicates

4.5 years ago • updated 4.4 years ago Stefany Solano • 0

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790

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diffhic estimate dispersion value glm no replicates deseq

updated 4.8 years ago by Aaron Lun ★ 27k • written 4.8 years ago by hwick1 ▴ 20

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3.4k

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ATAC differential binding analysis no replicates DEseq2 chromatin

4.9 years ago • updated 4.8 years ago YaGalbi ▴ 20

6 results • Page 1 of 1

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Comment: Weird output of DESeq2 when using single sample from one group agains the other by Michael Love 35k

See the 2014 paper, the MLE LFC is found via IRLS: "We use the standard iteratively reweighted least-squares algorithm [12] for each gene’…

Comment: Weird output of DESeq2 when using single sample from one group agains the other by FantasticAI • 0

Thank you for the help. Sorry for keep asking silly questions: I wonder given 2 groups (A and B), and each group has 6 samples, how does th…

Answer: DESeq2 Responder vs Non-Responders nested design by Michael Love 35k

Unfortunately, I have to reserve my time on the support site for software related questions. For consultation about statistical design and …

Comment: How to use subjunc for differential splicing analysis? by Assa Yeroslaviz ★ 1.5k

I assume, that it would make more sense to quantify the reads based on the gene-level and not the exon-level, following by using the `diffS…

Comment: Reading large file (15GB) in R by nabiyogesh • 0

Thanks Sean, I am getting below error with fread, I am running this on HPC with 500GB. > library(data.table) data.table 1.14.2 u…

Votes

Where can I find EnsDb.Hsapiens.v105?

Two-way interaction, linear redundancy

Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data

Answer: Joint disperstion estimation for DEXSeq and DESeq2

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