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no replicates
•
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0
votes
0
replies
707
views
MethylSig is not giving DMRs with no replicates
methylsig
no replicates
dmr
5.8 years ago
nilaycan
• 0
1
vote
5
replies
2.9k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Tony
• 0
4
votes
9
replies
10k
views
DESeq2, no replicate
deseq2
no replicates
high p-adj values
updated 21 months ago by
Michael Love
41k • written 6.6 years ago by
Mahtetie
• 0
4
votes
8
replies
1.8k
views
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
rnaseq
edger
DGE
no replicates
6.7 years ago
Stefany Solano
• 0
2
votes
1
reply
1.2k
views
diffHiC with no biological replicates?
diffhic
estimate dispersion value
glm
no replicates
deseq
updated 7.1 years ago by
Aaron Lun
★ 28k • written 7.1 years ago by
hwick1
▴ 20
5
votes
7
replies
4.5k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
7.1 years ago
BioinfGuru
▴ 30
6 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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