Bioconductor No replicates

Showing : no replicates • reset

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901

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methylsig no replicates dmr

6.8 years ago nilaycan • 0

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3.7k

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deseq2 without replicate no replicates

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Tony • 0

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12k

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deseq2 no replicates high p-adj values

updated 2.8 years ago by Michael Love 43k • written 7.6 years ago by Mahtetie • 0

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2.4k

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rnaseq edger DGE no replicates

7.7 years ago Stefany Solano • 0

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1.5k

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diffhic estimate dispersion value glm no replicates deseq

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by hwick1 ▴ 20

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5.3k

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ATAC differential binding analysis no replicates DEseq2 chromatin

8.1 years ago BioinfGuru ▴ 70

6 results • Page 1 of 1

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Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

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