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mikelove
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Different version of DESeq2
deseq2
mikelove
6.2 years ago
marika.catapano
• 0
1
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8
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1.2k
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DESeq2 DEG analysis 99% overlap among LRT and specific contrasts time course no matching time point controls
deseq2
mikelove
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
KRA
• 0
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4.4k
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DESeq2 model design using continuous viable only
deseq2
mikelove
updated 2.8 years ago by
Michael Love
41k • written 6.4 years ago by
NinaKons
• 0
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Comment: Assist me in determining whether the analysis process using the limma package ha
by
SSSJec
• 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score?
by
Gordon Smyth
50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Chris
• 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
alserg
▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Thanks Robert for an educative response!
Votes
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
Comment: Why p value inconsistent when using different number of pathway score?
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bioinf
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Gordon Smyth
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