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mlinterfaces
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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
10.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.0k
views
How to best include hyperparameter optimization in MLInterfaces?
MLInterfaces
MLInterfaces
updated 11.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.0 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray
Classification
Cancer
Ovarian
PROcess
MLInterfaces
ASSIGN
Microarray
Cancer
11.5 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
1.2k
views
xvalSpec('NOTEST') problem
MLInterfaces
MLInterfaces
updated 11.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.9 years ago by
Gustavo Fernández Bayón
▴ 440
0
votes
1
reply
1.0k
views
Need help with MLearn in MLInterfaces package
Clustering
MLInterfaces
Clustering
MLInterfaces
updated 15.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.1 years ago by
Tul Gan
▴ 10
0
votes
0
replies
1.2k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH
SNP
Genetics
Annotation
GO
Visualization
affy
limma
aCGH
MLInterfaces
Category
SNP
16.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
778
views
stat.diag.daB MLInterfaces
Classification
MLInterfaces
Classification
MLInterfaces
17.5 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
960
views
Error in xval: No Direct or Inherited Method for this call
Biobase
MLInterfaces
Biobase
MLInterfaces
17.6 years ago
mpg33@drexel.edu
▴ 90
0
votes
0
replies
1.2k
views
Error in xval: No Direct or Inherited Method for this call
Survival
Biobase
genefilter
MLInterfaces
Survival
Biobase
genefilter
MLInterfaces
17.6 years ago
Martin Morgan
25k
0
votes
3
replies
1.1k
views
xval in MLInterfaces package
MLInterfaces
MLInterfaces
updated 17.8 years ago by
Martin Morgan
25k • written 17.8 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.0k
views
MLInterfaces
GeneSpring
MLInterfaces
GeneSpring
MLInterfaces
updated 18.2 years ago by
Stephen Henderson
★ 1.0k • written 18.2 years ago by
Qi.Zhang@astrazeneca.com
▴ 60
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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