Bioconductor Msgfplus

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MSGFplus MSGFgui software error

7.8 years ago Owen.Leiser • 0

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MSGFplus

2.9 years ago yueli7 ▴ 20

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msgfplus mac java

updated 5.2 years ago by Mike Smith ★ 6.1k • written 5.2 years ago by dgemoets • 0

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peptide peptideidentification rTANDEM MSGFplus Alternatives

updated 8 months ago by shepherl 3.5k • written 8 months ago by vaddanki ▴ 10

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Comment: Mixed up sample info with plotPCA by Michael Love 40k

Just as a note, if the sample info table had been named (that is `rownames(sampleInfo)` not `NULL`, DESeq2 would have been able to detect t…

Comment: Mixed up sample info with plotPCA by sara.jacobson • 0

You were correct. The order of my samples in my sample info-file did not match the order of the samples in my count data file. Thank you!

Answer: Delete all profiles by shepherl 3.5k

Please send requests to webmaster@bioconductor.org providing more details like the full emails associated with the accounts. Thank you

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Check colnames of count data. I think you are providing these in different order to DESeq2.

Comment: Mixed up sample info with plotPCA by sara.jacobson • 0

Ok, thank you. This is everything from my session: > library("ggplot2") > library("dplyr") Attaching package: 'dplyr' …

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