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6 results • Page 1 of 1

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Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Kevin Blighe 3.2k

It is likely that you need to install the libraries on your Ubuntu OS outside R, via: apt-get install libhdf5-dev Note: use `sudo` if…

Comment: Combining HTSeq and RNA-SeQ for differential analysis by szomolay • 0

The disease data is from TCGA and the normal data is from GTEx. I am trying to do DE analysis and I am aware of the Xena portal where log2(…

Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k

What messages do you receive when you try to install the *GenomeInfoDbData* package?

Answer: derfinder model.matrix with limma or single base-level F-statistics analysis by Leonardo Collado Torres ▴ 890

Hi, Can you provide an example that breaks? The following R code works for me: ```R library("derfinder") set.seed(20210801) pheno …

Comment: Combining HTSeq and RNA-SeQ for differential analysis by ATpoint ▴ 710

The fact that you don't have raw data indicate that disease and healthy conditions come from different datasets or studies, hence there is …

Votes

A: DESeq2: multiple conditions design -- How to select subset comparisons from the

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Awards • All

Scholar to Leonardo Collado Torres ▴ 890