Biostar Mac

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RStudio R M1 BiocParallel Mac

updated 4 weeks ago by Christian Mertes • 0 • written 12 weeks ago by me.achleitner • 0

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196

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biomaRt mac

updated 12 weeks ago by James W. MacDonald 62k • written 12 weeks ago by alfonsosaera • 0

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1.8k

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error mac DESeq2 GenomeInfoDb R

2.1 years ago • updated 24 months ago Dan ▴ 20

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software error WGCNA mac

updated 2.7 years ago by James W. MacDonald 62k • written 2.7 years ago by 562125035 • 0

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1.8k

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BiocManager Mac

updated 3.6 years ago by Martin Morgan 25k • written 3.6 years ago by raf4 ▴ 20

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820

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BiocParallel mac R

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by geo.vogler ▴ 10

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986

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msgfplus mac java

updated 4.6 years ago by Mike Smith ★ 5.9k • written 4.6 years ago by dgemoets • 0

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900

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gwascat ggbio Mac

6.6 years ago jameshunterbr • 0

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1.3k

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rhdf5 r mac

7.5 years ago ambageo • 0

9 results • Page 1 of 1

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Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k