Bioconductor Multiple groups

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deseq2 interaction term multiple groups betaprior

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by tarun2 • 0

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942

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deseq2 multiple groups

updated 5.6 years ago by James W. MacDonald 64k • written 5.6 years ago by amir_b_e • 0

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760

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deseq2 multiple groups

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by blobbyscience • 0

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1.4k

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timecourse multiple groups edgeR

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by BharathAnanth ▴ 80

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1.8k

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multiple groups differential gene expression microarray

6.0 years ago A ▴ 40

5 results • Page 1 of 1

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Comment: Ensembl down??? by bas_work ▴ 20

"external_gene_name" is a biomaRt attribute for mouse gene names, equivalent but (obviously) not identical to human HGNC symbols.

Comment: regionCounts() from csaw - object 'fancy_mseq' not found by dineika.chandrananda • 0

Did you get past this error? If so can you summarise what worked?

Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

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Answer: Differential gene expression analysis

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