Bioconductor Multiple groups

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timecourse multiple groups edgeR

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by BharathAnanth ▴ 80

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deseq2 multiple groups

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by amir_b_e • 0

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deseq2 interaction term multiple groups betaprior

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by tarun2 • 0

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2.1k

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multiple groups differential gene expression microarray

6.8 years ago A ▴ 40

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934

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deseq2 multiple groups

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by blobbyscience • 0

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Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k

What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…

Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k

This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…

Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k

DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…

Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k

Sorry - I requested this to be posted here, I will answer.

Answer: tximport data import by Michael Love 42k

Reminder that tximeta exists -- if you are working with mouse or human data and using Ensembl or GENCODE (or RefSeq, but not "latest" which…

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Answer: Should tSNE from biol. replicates look alike?

Comment: fgsea stuck in an infinite loop in the middle of the run

Answer: Empty Results from champ.DMP Despite Expected Output

Answer: How to use compareCluster in ClusterProfiler?

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Scholar to James W. MacDonald 67k

Popular Question to Matthew Thornton ▴ 380