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Guido Hooiveld
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chaof
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Returning gene functional annotations with gene symbols as input (using mygene Bioconductor package)
updated 5.1 years ago by
James W. MacDonald
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written 5.1 years ago by
Bohdan Khomtchouk
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5.3 years ago
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Answer: Design and contrast matrices for analyzing the effect of two factors of interest
by
Gordon Smyth
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> In a typical regression, I would just add them to the model when estimating my coefficients of interest
Why not do the same with limma? …
Comment: TPM normalization starting with read counts
by
Gordon Smyth
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> So you think my method in TPM normalization that I introduced above is not good?
Your computation of RPKM using edgeR is fine, provided …
Comment: error in package GenVisR while installing
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堃
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Package ‘FField’ was removed from the CRAN repository.[enter link description here][1]
I installed FField by using remotes::install_github…
Comment: DESeq 2 failes to load
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Ruggero
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0
This solved the error, in case someone else is having compilation errors from installing RSQllite:
install.packages('RSQLite', repos='http…
Comment: pathview says my nonmodel species is unknown: "species invalid"
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Guido Hooiveld
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A while ago a faced the same for another non-model organism. I was able to get it working using a 'hack'.
This hack is nothing more than m…
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