Bioconductor Narrowpeaks

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Rsubread atac-seq narrowpeaks featurecounts

updated 8.0 years ago by Wei Shi ★ 3.6k • written 8.0 years ago by j.bergenstrahle ▴ 90

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 10.4 years ago by Gordon Smyth 53k • written 10.5 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq NarrowPeaks ChIPSeq chipseq NarrowPeaks

11.5 years ago Robert Chase ▴ 10

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GO DiffBind NarrowPeaks GO DiffBind NarrowPeaks

11.7 years ago Rory Stark ★ 5.2k

4 results • Page 1 of 1

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Comment: bake() and cool() resulting in an empty table by Francesc • 0

Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…

Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

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Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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