Showing : narrowpeaks • reset
4
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Rsubread counting peaks ATACseq
Rsubread atac-seq narrowpeaks featurecounts
updated 5.2 years ago by ★ 3.5k • written 5.2 years ago by ▴ 80
8
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9
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 7.7 years ago by 47k • written 7.7 years ago by ▴ 140
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677
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narrowpeaks profMatrix rangeval error
ChIPSeq chipseq NarrowPeaks ChIPSeq chipseq NarrowPeaks
8.8 years ago Robert Chase ▴ 10
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0
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763
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DiffBind error loading dba
GO DiffBind NarrowPeaks GO DiffBind NarrowPeaks
9.0 years ago Rory Stark ★ 4.6k
4 results • Page 1 of 1
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Answer: nullranges by Michael Love 39k
Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…
Answer: Question about GWASTools gdsSubset by SuperD • 0
Have to define 'snp,scan' or 'scan,snp' for my case.
Comment: Not able to download recount3 data by Leonardo Collado Torres ★ 1.0k
Please don't reopen that issue thread, as it will ping lots of people. Can you try using the newly documented Amazon AWS mirror? ```R lib…
Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0
Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…
Answer: struggling to create a heatmap by ATpoint ★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
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Significant reporter activity with mpralm function
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Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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