Bioconductor Networks

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geneticinteractions cancer networks machine_learning

2.0 years ago Colm • 0

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cancer networks genomics epigenomics Job

5.3 years ago • updated 5.2 years ago marschaefer • 0

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WGCNA Networks

updated 6.0 years ago by Peter Langfelder ★ 3.0k • written 6.0 years ago by agustin.gonvi ▴ 20

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wgcna modules coexpression networks

7.0 years ago jol.espinoz ▴ 40

4 results • Page 1 of 1

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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0

Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …

Comment: Clarification on GOALL / GO2ALLORFs mapping by DavideSant • 0

Thank you for your answer James. I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…

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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

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Scholar to Gordon Smyth 52k