Bioconductor Nnnorm

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Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800

12.0 years ago Scott Robinson ▴ 130

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Microarray Normalization affy marray nnNorm Microarray Normalization affy marray nnNorm

updated 12.1 years ago by cstrato ★ 3.9k • written 12.1 years ago by Guest User ★ 13k

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nnNorm nnNorm

updated 19.2 years ago by Seth Falcon ★ 7.4k • written 19.2 years ago by D.Enrique ESCOBAR ESPINOZA ▴ 360

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Normalization nnNorm Normalization nnNorm

19.9 years ago Tarca, Adi ▴ 570

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Microarray Normalization GO Visualization Network nnNorm Microarray Normalization GO

20.0 years ago Tarca, Adi ▴ 570

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Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0

When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

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Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

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