Bioconductor Nonspecific filtering

Showing : nonspecific filtering • reset

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limma nonspecific filtering weight

updated 7.2 years ago by Gordon Smyth 53k • written 7.3 years ago by andrew.birnberg ▴ 20

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microarray affymetrix microarrays pre-filtering filtering nonspecific filtering

updated 8.4 years ago by Wolfgang Huber ★ 13k • written 8.4 years ago by n.lu • 0

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Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k

apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…

Comment: Save the Date for EuroBioC2026 in Turku! by jamesbennettki • 0

That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

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Bioconductor 3.22 Released!

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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