Bioconductor Nonspecific filtering

Showing : nonspecific filtering • reset

8

votes

6

replies

1.7k

views

limma nonspecific filtering weight

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by andrew.birnberg ▴ 20

1

vote

6

replies

2.4k

views

microarray affymetrix microarrays pre-filtering filtering nonspecific filtering

updated 8.4 years ago by Wolfgang Huber ★ 13k • written 8.4 years ago by n.lu • 0

2 results • Page 1 of 1

Recent ...

Replies

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Awards • All