Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
filtering
•
reset
0
votes
0
replies
116
views
DESeq2 - Outliers influencing sig DEGs, filter counts per group samples, not by all samples
filtering
DESeq2
outliers
9 days ago
smac_head
• 0
3
votes
11
replies
1.5k
views
SD filtering before DEG analysis with limma : possible or not ?
filtering
STD
DEG
limma
updated 13 months ago by
Gordon Smyth
51k • written 13 months ago by
alexia.brunel
• 0
5
votes
7
replies
1.4k
views
Question about setting threshold using filtering by expression on genes in edgeR
filtering
RNA-Seq
CPM
edgeR
filterByExpr
updated 14 months ago by
Gordon Smyth
51k • written 14 months ago by
mohammedtoufiq91
▴ 10
5
votes
8
replies
2.1k
views
Question on performing filtering by gene expression on a normalized matrix in limma?
expression
R
filtering
limma
22 months ago • updated 20 months ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
578
views
Filtering single-channel Affymetrix probes
filtering
probe
MicroarrayData
23 months ago
Fatemeh
• 0
3
votes
5
replies
2.3k
views
How to analyze pre-processed RNA-Seq data from GEO based on the deseq R package for filtering and DE analysis
deseq
rna-seq
filtering
DE
deseq2
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.0k
views
Filter TCGAbiolinks by Gene in Query
tcgabiolinks
filtering
gdc
TCGABiolinks
rnaseq
4.5 years ago
jam526
• 0
2
votes
4
replies
1.9k
views
Filtering, minimum sample number, and condition in edgeR
edger
filtering
updated 5.7 years ago by
Ryan C. Thompson
★ 7.9k • written 5.7 years ago by
rproendo
▴ 20
0
votes
1
reply
847
views
How to keep the genes whose counts are equal or greater than 10
deseq2
filtering
updated 5.7 years ago by
James W. MacDonald
66k • written 5.7 years ago by
n_h_78
• 0
1
vote
1
reply
924
views
DeSeq2 independant filtering barely removes any genes
deseq2
differential gene expression
filtering
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
mnaymik
• 0
1
vote
2
replies
1.2k
views
Filtering Rna-seq counts
rna-seq
filtering
updated 6.2 years ago by
Gordon Smyth
51k • written 6.2 years ago by
Aurora
▴ 20
5
votes
12
replies
7.0k
views
Filtering step for differential analysis in edgeR
r
edger
differential gene expression
filtering
bioconductor
updated 6.2 years ago by
Gordon Smyth
51k • written 6.2 years ago by
Biologist
▴ 120
4
votes
8
replies
1.6k
views
edgeR error when trying to filter peaks with low read counts
edger
R
filtering
6.3 years ago
camerond
• 0
0
votes
2
replies
1.2k
views
Filtering genes with a minimum number of counts between samples
DESeq2
filtering
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
A
▴ 40
1
vote
1
reply
1.7k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
rbronste
▴ 60
0
votes
2
replies
1.8k
views
DiffBind remove low count intervals for differential analysis
diffbind
filtering
6.6 years ago
gasta88
• 0
0
votes
2
replies
1.1k
views
DiffBind dba.report inconsistent output when using filter parameters
diffbind
dba.report
filtering
6.7 years ago
konstantopoulos
• 0
1
vote
3
replies
5.4k
views
DESeq2: How to manually perform filtering and outlier detection?
deseq2
filtering
outliers
count outliers
updated 7.0 years ago by
Wolfgang Huber
★ 13k • written 7.0 years ago by
heikki.sarin
▴ 10
1
vote
6
replies
2.0k
views
Nonspecific filtering of microarray data
microarray
affymetrix microarrays
pre-filtering
filtering
nonspecific filtering
updated 7.2 years ago by
Wolfgang Huber
★ 13k • written 7.2 years ago by
n.lu
• 0
2
votes
2
replies
1.1k
views
Limma filtering based on treatment group
limma
filtering
updated 7.2 years ago by
Steve Lianoglou
★ 13k • written 7.2 years ago by
jamie.gearing
▴ 60
3
votes
4
replies
1.4k
views
Any way to detach or simplify nested GRangesList ?
grangeslist
filtering
r
7.8 years ago
Jurat Shahidin
▴ 80
1
vote
2
replies
2.1k
views
edgeR filtering: how to remove meta tags and lowly expressed reads (cpm)
edger
filtering
cpm
updated 7.9 years ago by
Gordon Smyth
51k • written 7.9 years ago by
lynski008
• 0
6
votes
4
replies
1.8k
views
Filtering after a contrast
deseq2
r
filtering
bioconductor
updated 8.0 years ago by
Steve Lianoglou
★ 13k • written 8.0 years ago by
rattigak
• 0
0
votes
1
reply
1.1k
views
Does the normalization pipeline for scran include filtering out genes with low counts?
filtering
scran
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
amckenz
• 0
8
votes
11
replies
9.6k
views
Filtering of RNA-seq data in EdgeR
rnaseq
edger
filtering
updated 8.1 years ago by
David ROUX
▴ 20 • written 8.2 years ago by
alireza_sharifian_10
▴ 10
5
votes
12
replies
2.0k
views
Filtering before the linear modelling and empirical bayes steps
DEG
Limma
Filtering
updated 8.3 years ago by
Ryan C. Thompson
★ 7.9k • written 8.4 years ago by
Shamim Sarhadi
▴ 20
2
votes
4
replies
2.3k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
affymetrix
limma
filtering
updated 9.2 years ago by
James W. MacDonald
66k • written 9.2 years ago by
ablanchetcohen
• 0
2
votes
7
replies
2.8k
views
Different filters with edgeR
edger
filtering
9.3 years ago
cpcantalapiedra
• 0
3
votes
10
replies
2.4k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering
bioconductor
genesymbols
expressionset
9.4 years ago
svlachavas
▴ 830
29 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
Hong Kong,
17 minutes ago
France,
26 minutes ago
WEHI, Melbourne, Australia,
59 minutes ago
Ann Arbor,
3 hours ago
San Diego,
3 hours ago
Traffic: 576 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6