Bioconductor Noob

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Quantile noob Normalization minfi minfiDataEPIC

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by mikat • 0

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minfi bmiq noob preprocessQuantile champ

updated 4.1 years ago by James W. MacDonald 67k • written 4.2 years ago by Lin ▴ 50

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minfi RnBeads noob preprocessFunnorm BMIQ

updated 7.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.6 years ago by rahel14350 ▴ 10

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Methylumi NOOB CHAMP Background corection illimina 450k methylation

7.6 years ago rahel14350 ▴ 10

4 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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