Showing : RnBeads • reset
0
votes
2
replies
1.9k
views
save.rnb.set warnings when trying to save rnb.set
RnBeads RnBeads.hg19 MethylationArray
updated 8 months ago by • 0 • written 19 months ago by • 0
0
votes
3
replies
1.9k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 2.8 years ago by ▴ 780 • written 2.8 years ago by ▴ 10
0
votes
0
replies
911
views
rnbeads inference
epigenetics RnBeads
3.1 years ago Jitendra ▴ 10
0
votes
0
replies
932
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
3.9 years ago Jitendra ▴ 10
0
votes
0
replies
1.2k
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.9 years ago Jitendra ▴ 10
0
votes
8
replies
3.0k
views
error in RnBeads installation
Epigenetics RnBeads R
4.0 years ago • updated 3.9 years ago Jitendra ▴ 10
1
vote
1
reply
1.4k
views
How to export methylation tracks in bed format
RnBeads
updated 5.0 years ago by 68k • written 5.0 years ago by ▴ 10
0
votes
0
replies
1.5k
views
How to know the number of detected CpG islands with RnBeads
RnBeads
5.0 years ago Federica ▴ 10
0
votes
0
replies
1.7k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
5.0 years ago D ▴ 10
1
vote
2
replies
3.9k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 5.0 years ago by ▴ 10
2
votes
4
replies
2.0k
views
How to launch the RnBeads Data Juggler?
RnBeads
5.0 years ago Federica ▴ 10
2
votes
9
replies
2.9k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 4.3 years ago by • 0 • written 5.2 years ago by • 0
2
votes
6
replies
2.1k
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 13 months ago by • 0 • written 5.7 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
5.9 years ago caoy4g4 • 0
0
votes
2
replies
2.8k
views
RnBeads set ghost script environment variable
RnBeads ghostscript
6.3 years ago Kathrin.Klee • 0
1
vote
3
replies
2.0k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 6.7 years ago by ▴ 50 • written 6.7 years ago by ★ 1.1k
0
votes
3
replies
1.7k
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 7.1 years ago by ▴ 50 • written 7.1 years ago by • 0
0
votes
1
reply
1.5k
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
7.8 years ago neuro3030 • 0
0
votes
1
reply
2.0k
views
RnBeads data preprocessing error
RnBeads
updated 7.9 years ago by • 0 • written 8.3 years ago by • 0
0
votes
0
replies
1.5k
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
8.0 years ago gabrielrfries • 0
1
vote
1
reply
2.0k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
8.3 years ago preethibagopi28 ▴ 10
0
votes
0
replies
1.5k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
8.5 years ago Theo ▴ 10
0
votes
2
replies
3.0k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 8.9 years ago by ★ 6.5k • written 8.9 years ago by ▴ 10
0
votes
0
replies
1.4k
views
'type = genes' for RnBeads::meth() function
rnbeads
9.1 years ago Tom ▴ 10
0
votes
0
replies
1.7k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
9.2 years ago Habil Zare ▴ 200
0
votes
0
replies
1.4k
views
RnBeads, enrichment analysis
rnbeads
9.3 years ago gaiusjaugustus • 0
0
votes
0
replies
2.0k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
9.5 years ago rasii • 0
4
votes
4
replies
4.1k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 9.9 years ago by 68k • written 10.0 years ago by ▴ 60
0
votes
2
replies
2.8k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 10.0 years ago by • 0 • written 10.5 years ago by • 0
0
votes
2
replies
1.9k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
10.0 years ago areyoujokingme • 0
0
votes
0
replies
2.8k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
10.2 years ago areyoujokingme • 0
2
votes
7
replies
2.7k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
10.2 years ago areyoujokingme • 0
0
votes
1
reply
1.9k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 10.3 years ago by • 0 • written 10.3 years ago by ▴ 120
0
votes
1
reply
1.7k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 10.3 years ago by • 0 • written 10.3 years ago by ▴ 40
0
votes
2
replies
2.4k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
10.3 years ago Brian Smith ▴ 120
1
vote
9
replies
3.0k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 10.3 years ago by • 0 • written 10.3 years ago by • 0
1
vote
1
reply
2.2k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 10.3 years ago by ▴ 10 • written 10.3 years ago by ▴ 120
0
votes
2
replies
2.2k
views
rnBeads error for the report path
software error rnbeads
updated 10.4 years ago by ★ 8.2k • written 10.4 years ago by • 0
0
votes
1
reply
2.3k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
10.5 years ago schasse • 0
0
votes
3
replies
3.7k
views
RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
10.6 years ago bmreilly • 0
2
votes
4
replies
3.1k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
10.6 years ago bmreilly • 0
41 results • Page 1 of 1
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Popular Question to Michael Love 43k
Popular Question to Dan Tenenbaum ★ 8.2k
Scholar to Gordon Smyth 53k
Locations • All
United States, 4 minutes ago
United States, 6 minutes ago
United States, 12 minutes ago
WEHI, Melbourne, Australia, 25 minutes ago
Germany, 26 minutes ago
Traffic: 1127 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6