Showing : illimina 450k methylation • reset
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 10 months ago by ▴ 220 • written 4.2 years ago by ▴ 20
1
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3
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469
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
2.7 years ago s.w.vanderlaan ▴ 30
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5
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738
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 2.8 years ago by ▴ 240 • written 2.8 years ago by ▴ 50
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1
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613
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
3.6 years ago preethibagopi28 ▴ 10
1
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1
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585
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 3.7 years ago by 57k • written 3.7 years ago by • 0
0
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0
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
3.7 years ago david.ch • 0
0
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0
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
4.2 years ago rahel14350 ▴ 10
0
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1
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1.0k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 4.3 years ago by ▴ 60 • written 4.4 years ago by ▴ 120
0
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1
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612
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 4.4 years ago by 57k • written 4.4 years ago by • 0
0
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0
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496
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
4.5 years ago IOM ▴ 20
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0
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482
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
4.7 years ago arisarkar88 • 0
4
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3
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1.1k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
4.9 years ago Andreas Paul • 0
0
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2
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514
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Common probes between 27K and 450 chip
illimina 450k methylation
4.9 years ago Adrian Johnson ▴ 330
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2
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
5.2 years ago Adam • 0
0
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4
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754
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 5.3 years ago by 6.5k • written 5.3 years ago by ▴ 40
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2
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1.1k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
5.6 years ago Brian Smith ▴ 120
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13
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1.0k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
5.7 years ago jdangelo • 0
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2
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1.6k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
6.0 years ago maden.sean ▴ 10
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3
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2.0k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 6.2 years ago by ▴ 120 • written 6.2 years ago by ▴ 120
19 results • Page 1 of 1
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Answer: Issue with GSVA using dgCMatrix by Robert Castelo ★ 2.7k
Hi, Indeed we're still working on this for the default GSVA method, but using the ssGSEA method, i.e., adding the argument `method="ssgs…
Comment: Strange error in bsseq when trying to assign seqinfo by jonescelinaa • 0
Ahh that is great thank you ! Good for special needs too ! [krunker][1] [1]: http://krunkeronline.com/
Comment: Unable to run "library(DESeq2)" successfully by jonescelinaa • 0
very useful information. Thank you for sharing! [friday night funkin][1] [1]: https://fridaynightfunkin.co
Comment: Binding matrix created by DiffBind by Rory Stark ★ 3.9k
Everything that is supposed to be there is there! The internal `$binding` matrix uses a type of factor representation of chromosome names, …
Comment: Data input for aracne2regulon function in viper package by Luna_P • 0
Thank you!
Votes
Answer: DESeq2 for allele-specific expression with contrasts between conditions
C: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
Comment: Data input for aracne2regulon function in viper package
Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
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