Showing : illimina 450k methylation • reset
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 2.0 years ago by ▴ 220 • written 5.4 years ago by ▴ 20
1
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3
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837
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
3.8 years ago s.w.vanderlaan ▴ 30
0
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5
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1.1k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 4.0 years ago by ▴ 250 • written 4.0 years ago by ▴ 50
1
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1
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809
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
4.8 years ago preethibagopi28 ▴ 10
1
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1
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801
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 4.9 years ago by 60k • written 4.9 years ago by • 0
0
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0
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799
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
4.9 years ago david.ch • 0
0
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0
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781
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
5.4 years ago rahel14350 ▴ 10
0
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1
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1.2k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 5.4 years ago by ▴ 60 • written 5.5 years ago by ▴ 120
0
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1
reply
741
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 5.5 years ago by 60k • written 5.5 years ago by • 0
0
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0
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611
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
5.6 years ago IOM ▴ 20
0
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0
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555
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
5.9 years ago arisarkar88 • 0
4
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3
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1.3k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
6.1 years ago Andreas Paul • 0
0
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2
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629
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Common probes between 27K and 450 chip
illimina 450k methylation
6.1 years ago Adrian Johnson ▴ 330
1
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2
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1.5k
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
6.4 years ago Adam • 0
0
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4
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1.0k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 6.4 years ago by 6.5k • written 6.4 years ago by ▴ 40
0
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2
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1.4k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
6.8 years ago Brian Smith ▴ 120
1
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13
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1.3k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
6.9 years ago jdangelo • 0
2
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2
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1.9k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
7.1 years ago maden.sean ▴ 10
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3
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2.4k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 7.4 years ago by ▴ 120 • written 7.4 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: Retrieve gene summary start/end in biomart query by rbenel ▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues by e.iich • 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue by Hervé Pagès 15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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