Showing : illimina 450k methylation • reset
7
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2.9k
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 3 months ago by ▴ 240 • written 7.1 years ago by ▴ 20
1
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3
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1.6k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
5.5 years ago s.w.vanderlaan ▴ 30
0
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5
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2.1k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 5.7 years ago by ▴ 280 • written 5.7 years ago by ▴ 60
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1
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1.4k
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
6.5 years ago preethibagopi28 ▴ 10
1
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1
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1.5k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
0
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0
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1.2k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
6.6 years ago david.ch • 0
0
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0
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1.2k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
7.1 years ago rahel14350 ▴ 10
0
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1
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1.7k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.1 years ago by ▴ 60 • written 7.2 years ago by ▴ 120
0
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1
reply
994
views
effective tools, methylation data
illimina 450k methylation bioconductor
updated 7.2 years ago by 65k • written 7.2 years ago by • 0
0
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0
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906
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
7.3 years ago IOM ▴ 20
0
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0
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790
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
7.6 years ago arisarkar88 ▴ 40
4
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3
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1.8k
views
Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
7.8 years ago • updated 7.7 years ago Andreas Paul • 0
0
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2
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971
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Common probes between 27K and 450 chip
illimina 450k methylation
7.8 years ago Adrian Johnson ▴ 330
1
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2
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2.0k
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
8.1 years ago Adam • 0
0
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4
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1.6k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by ▴ 40
0
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2
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1.9k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.5 years ago Brian Smith ▴ 120
1
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13
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2.2k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
8.6 years ago jdangelo • 0
2
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2
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2.5k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
8.8 years ago metamaden ▴ 10
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3
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3.1k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by ▴ 120
19 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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