Showing : illimina 450k methylation • reset
9
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 16 months ago by ▴ 280 • written 8.1 years ago by ▴ 20
1
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3
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2.1k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
6.6 years ago s.w.vanderlaan ▴ 30
0
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5
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2.8k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 6.7 years ago by ▴ 290 • written 6.7 years ago by ▴ 60
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1
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1.8k
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.5 years ago preethibagopi28 ▴ 10
1
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1
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2.3k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
0
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0
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1.5k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
7.6 years ago david.ch • 0
0
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0
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1.5k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
8.1 years ago rahel14350 ▴ 10
0
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1
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2.0k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.2 years ago by ▴ 60 • written 8.3 years ago by ▴ 120
0
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1
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1.2k
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 8.3 years ago by 68k • written 8.3 years ago by • 0
0
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0
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1.1k
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
8.4 years ago IOM ▴ 20
0
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0
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942
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
8.6 years ago arisarkar88 ▴ 40
4
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3
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2.2k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
8.8 years ago Andreas Paul • 0
0
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2
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1.2k
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Common probes between 27K and 450 chip
illimina 450k methylation
8.8 years ago Adrian Johnson ▴ 330
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2
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2.4k
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
9.1 years ago Adam • 0
0
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4
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1.9k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.2 years ago by ★ 6.5k • written 9.2 years ago by ▴ 50
0
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2
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2.2k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.5 years ago Brian Smith ▴ 120
1
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13
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2.7k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.6 years ago jdangelo • 0
2
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2
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3.1k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
9.9 years ago metamaden ▴ 10
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3
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3.6k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 10.1 years ago by ▴ 230 • written 10.1 years ago by ▴ 120
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Comment: EuroBioC2023 abstract submission is open! by arden • 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Comment: Gene Ontology (GO) Analysis by GA ▴ 10
Thank you!
Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction ( by sk • 0
If I use factor to create the Condition_SCR_vs_WT coef, then the other chefs would be Condition_KD1_vs_WT and Condition_KD2_vs_WT, but I ne…
Comment: How to load scRNA-seq data from GEO by petergrahamclark • 0
the paper I'm working off suggests removing all cells where the UMI is less than 2000. I assume we don't have enough data for umi counts. c…
Comment: How to load scRNA-seq data from GEO by Gordon Smyth 52k
I suggest you use readMM() as advised by James, but then do a massive amount of cell filtering before doing any other conversions or creati…
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Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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