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offset
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8
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Advice on appropriateness of an offset in glmGamPoi/edgeR
DESeq2
glmGamPoi
offset
edgeR
scRNAseq
updated 7 months ago by
Gordon Smyth
52k • written 7 months ago by
Alec
• 0
1
vote
9
replies
1.8k
views
Comparison between limma and edgeR of reads ratio
edgeR
limma
offset
updated 6.8 years ago by
Gordon Smyth
52k • written 6.8 years ago by
catpaw.tw
• 0
0
votes
1
reply
2.0k
views
Incorporating 'offset' into edgeR pipeline
edgeR
EDASeq
offset
updated 7.1 years ago by
Aaron Lun
★ 28k • written 7.1 years ago by
alakatos
▴ 130
3
votes
3
replies
4.6k
views
Negative values after normalizing an agilent microarray dataset with limma
limma
agilent
offset
background correction
microarray
updated 9.0 years ago by
James W. MacDonald
68k • written 9.0 years ago by
Konstantinos Yeles
▴ 80
4 results • Page
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Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Votes
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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