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offset
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1
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8
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Advice on appropriateness of an offset in glmGamPoi/edgeR
DESeq2
glmGamPoi
offset
edgeR
scRNAseq
updated 16 months ago by
Gordon Smyth
53k • written 16 months ago by
Alec
• 0
1
vote
9
replies
2.1k
views
Comparison between limma and edgeR of reads ratio
edgeR
limma
offset
updated 7.6 years ago by
Gordon Smyth
53k • written 7.6 years ago by
catpaw.tw
• 0
0
votes
1
reply
2.2k
views
Incorporating 'offset' into edgeR pipeline
edgeR
EDASeq
offset
updated 7.8 years ago by
Aaron Lun
★ 29k • written 7.8 years ago by
alakatos
▴ 130
3
votes
3
replies
5.2k
views
Negative values after normalizing an agilent microarray dataset with limma
limma
agilent
offset
background correction
microarray
updated 9.8 years ago by
James W. MacDonald
68k • written 9.8 years ago by
Konstantinos Yeles
▴ 90
4 results • Page
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Comment: Save the Date: BioC2026
by
eja.gsssssswwse.r.m
• 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released!
by
eja.gsssssswwse.r.m
• 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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