Bioconductor OpenPrimeR

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openPrimeR

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Santiago Edilberto • 0

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PCRmultiplex openPrimeR

2.6 years ago • updated 2.5 years ago Santiago Edilberto • 0

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openPrimeR

updated 3.3 years ago by matthias-doering ▴ 40 • written 3.3 years ago by wnussbau • 0

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openPrimeR

updated 4.1 years ago by matthias-doering ▴ 40 • written 4.1 years ago by benedikt.kirchner • 0

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openPrimeR

updated 4.1 years ago by matthias-doering ▴ 40 • written 4.5 years ago by marongiu.luigi • 0

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openPrimeR

updated 2.5 years ago by Santiago Edilberto • 0 • written 4.5 years ago by marongiu.luigi • 0

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openPrimeR

4.5 years ago marongiu.luigi • 0

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openPrimeR

written 4.5 years ago by marongiu.luigi • 0

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openPrimeRui openPrimeR

6.3 years ago Vinicius Henrique da Silva ▴ 40

9 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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