written 2.8 years ago by
marongiu.luigi
•
0
2
votes
9
replies
1.5k
views
0
votes
4
replies
428
views
10 months ago • updated 9 months ago
Santiago Edilberto
•
0
1
vote
3
replies
935
views
0
votes
2
replies
601
views
updated 9 months ago by
Santiago Edilberto
•
0
•
written 2.8 years ago by
marongiu.luigi
•
0
0
votes
1
reply
495
views
updated 2.4 years ago by
matthias-doering
▴
40
•
written 2.8 years ago by
marongiu.luigi
•
0
0
votes
1
reply
500
views
updated 18 months ago by
matthias-doering
▴
40
•
written 19 months ago by
wnussbau
•
0
0
votes
1
reply
230
views
updated 8 months ago by
Basti
▴
740
•
written 9 months ago by
Santiago Edilberto
•
0
0
votes
1
reply
501
views
updated 2.4 years ago by
matthias-doering
▴
40
•
written 2.4 years ago by
benedikt.kirchner
•
0
0
votes
0
replies
556
views
Recent ...
Replies
Comment: Correct the batch effect in methylation analysis in R
by
Gordon Smyth
49k
> Is it okay to apply removeBatchEffect before a limma analysis(limma linear model)?
No, you should not apply any batch correction before …
Comment: Correct the batch effect in methylation analysis in R
by
kyj2226
•
0
Thank you for your response Gordon :)
I've already run the code below, just add batch to the limma linear model
design <- model.matri…
Answer: Correct the batch effect in methylation analysis in R
by
Gordon Smyth
49k
You should not apply batch correction functions like harman before a limma analysis. Instead, just add `batch` to the limma linear model.
…
Answer: Agilent Microarray Gene Oncology analysis gone wrong
by
Gordon Smyth
49k
Your use of `coef=1` is incorrect, for reasons explained in the limma User's Guide. If you had simply left `coef` at the default, then thin…
Comment: Normalised counts from RUVg in RUVSeq
by
Shaimaa Gamal
•
0
Hello
I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …
Awards
• All
Popular Question to
Gordon Smyth
49k
Popular Question to
Lluís Revilla Sancho
▴
720
Popular Question to
Frederik Ziebell
▴
20
Popular Question to
Sam
▴
10
Scholar to
Rory Stark
★
5.1k
Locations
• All
The city by the bay, just now
WEHI, Melbourne, Australia, 9 minutes ago
South Korea, 2 hours ago
Russia, 2 hours ago
Russia, 2 hours ago
The city by the bay, just now
WEHI, Melbourne, Australia, 9 minutes ago
South Korea, 2 hours ago
Russia, 2 hours ago
Russia, 2 hours ago
Traffic: 552 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6