Biostar Pd.huex.1.0.st.v2

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pd.huex.1.0.st.v2 exon array analysis

updated 2.9 years ago by James W. MacDonald 58k • written 2.9 years ago by GENOMIC_region • 0

5

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pd.huex.1.0.st.v2 oligo

updated 4.1 years ago by James W. MacDonald 58k • written 4.1 years ago by Guido Hooiveld ★ 3.0k

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Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I have just confirmed there is no difference between edgeR 3.26.1 and edgeR 3.26.8 by running an analysis similar to yours first with edgeR…

Comment: VST transformation and covariates in the TCGA TARGET GTEx dataset by S ▴ 10

Hi Michael. Thanks for your reply. Yes, the dataset includes samples from these three projects TCGA, GTEX and TARGET. I selected just solid…

Comment: DESeq2 output explanation by krushnach80 • 0

"would expect you to set HSC as the reference level " yes this i had done . "report LSC vs HSC (read: log (LSC / HSC) as the LFC" thank you…

Comment: rtracklayer: error in importing bigwig file in r in windows by millerh1 • 0

I'm currently experiencing the same. I'm on `rtracklayer` version 1.53.1. On ubuntu: ``` > import("https://rlbase-data.s3.amazonaws.com/c…

Comment: Per gene Covariates by Michael Love 34k

If you have per gene and per sample corrections, you can use normalization factors (see DESeq2 paper and vignette first on this topic). Fo…

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Comment: Warning messages on Apple M1 BigSur

Comment: DESeq2 output explanation

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