Biostar Pd.porgene.1.1.st

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affymetrix microarrays pd.porgene.1.1.st annotation probe to gene id pathway analysis

updated 7.0 years ago by James W. MacDonald 62k • written 7.0 years ago by serpalma.v ▴ 60

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pd.porgene.1.1.st affymetrix microarrays

updated 7.2 years ago by James W. MacDonald 62k • written 7.2 years ago by serpalma.v ▴ 60

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Comment: mas5calls function doesn't work; mirna40cdf problem by Guido Hooiveld ★ 3.5k

Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…

Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

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Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k