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performance
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DESeq2 performance information for counts tables with very large rows number
deseq2
performance
8.1 years ago
atisou
• 0
1
vote
8
replies
2.4k
views
most efficient way to read adjacency matrix to make networkd3 graph
r
iterators
performance
updated 7.8 years ago by
phil.chapman
▴ 150 • written 7.8 years ago by
chrisclarkson100
▴ 50
2
votes
2
replies
985
views
Any way to speed up splitting relatively big GRanges objects by given threshold ?
r
granges
split
performance
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Jurat Shahidin
▴ 80
0
votes
5
replies
1.4k
views
How to plot benchmark result of R/ Bioconductor package (getting curve or line graph)?
r
benchmark
performance
ggplot2
7.4 years ago • updated 7.3 years ago
Jurat Shahidin
▴ 80
0
votes
0
replies
492
views
Profiling bioconductor packages in a straightforward fashion
HPC
profiling
performance
2.5 years ago
Jack
• 0
5 results • Page
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark?
by
Juan Higareda
• 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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