Bioconductor Split

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1.5k

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GenomicRanges split chromosome TxDb

updated 23 months ago by Hervé Pagès 16k • written 23 months ago by jon.klonowski ▴ 40

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887

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flowStats newbie split subset flowCore

5.2 years ago yulia.chupalova • 0

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1.1k

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granges genomicranges split

written 6.6 years ago by gaiusjaugustus • 0

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1.2k

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iranges fasta split

updated 6.8 years ago by Michael Lawrence 11k • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

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888

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r granges split performance

updated 7.1 years ago by Michael Lawrence 11k • written 7.1 years ago by Jurat Shahidin ▴ 80

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6.9k

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granges split r

updated 23 months ago by jon.klonowski ▴ 40 • written 7.8 years ago by Jurat Shahidin ▴ 80

6 results • Page 1 of 1

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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