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performance
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0
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488
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Profiling bioconductor packages in a straightforward fashion
HPC
profiling
performance
2.5 years ago
Jack
• 0
0
votes
5
replies
1.4k
views
How to plot benchmark result of R/ Bioconductor package (getting curve or line graph)?
r
benchmark
performance
ggplot2
7.3 years ago
Jurat Shahidin
▴ 80
2
votes
2
replies
982
views
Any way to speed up splitting relatively big GRanges objects by given threshold ?
r
granges
split
performance
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Jurat Shahidin
▴ 80
1
vote
8
replies
2.4k
views
most efficient way to read adjacency matrix to make networkd3 graph
r
iterators
performance
updated 7.8 years ago by
phil.chapman
▴ 150 • written 7.8 years ago by
chrisclarkson100
▴ 50
1
vote
2
replies
1.4k
views
DESeq2 performance information for counts tables with very large rows number
deseq2
performance
8.1 years ago
atisou
• 0
5 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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Rory Stark
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tangming2005
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James W. MacDonald
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