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GenomicFeatures phase gene models GFF

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by arendsee ▴ 10

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Answer: Highly DE genes but small count difference within conditions by h1vu81gcd7 • 0

It sounds like you're diving deep into DE analysis, comparing condition1 with the control using a solid design. However, the elevated padj …

Comment: dmpFinder for other objects by neyousha • 0

Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…

Comment: DEseq2 time-series design by Michael Love 42k

Would you mind making a new post -- it's just easier for threaded content. And feel free to post any particular code or images you need.

Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thanks for taking the time to report the bug! The provided `Valgrind` report is very helpful and suggests the issue lies within the banded …

Comment: Rsubread - Error on buildindex - big ref sequence by mdejesus • 0

Hi just checking if this limit still exists, and/or if there are plans to lift it? subread is our preferred tool kit, but we have some CRIS…

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Answer: dmpFinder for other objects

GSVA ssGSEA vs. Broad implementation of ssGSEA

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