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3.2 years ago • updated 3.1 years ago
K.
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updated 17 months ago by
yrkkhdesiserials
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written 3.1 years ago by
memy
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Answer: Automatically generate contrasts from a model matrix / formula
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I am very concerned that you are attempting to extract pairwise comparisons from an interaction formula like `0 + Group*Sex + Age`, because…
Comment: Mostly increased counts in differentially accessible peaks using DESeq2
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Ricardo Iván
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Hi Michael,
Thanks for your reply. After reviewing the PCAs, maybe the issue that despite the replicates looking similar, there is still a…
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Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google sea…
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ATpoint
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TCGA raw counts can be obtained for example using the TCGAbiolinks or recount packages.
Comment: How to reverse complement some elements of a DNAStringSet
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Christine Jones
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Fantastic, thank you
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