Bioconductor Phylogenetics

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phyloseq Phylogenetics

updated 7 months ago by yrkkhdesiserials • 0 • written 2.3 years ago by memy • 0

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phyloseq Phylogenetics

updated 8 months ago by RMiller ▴ 10 • written 8 months ago by kevin • 0

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Phylogenetics genomes R MultipleSequenceAlignment Bioconductor

2.3 years ago K. • 0

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Phylogenetics

2.3 years ago Lanjamarina • 0

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igraph networkanalysis Phylogenetics phyloseq

2.9 years ago Chantel • 0

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rna-seq phylogenetics protein modelling single-cell sequencing Job

3.3 years ago liam.childs • 0

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Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by James W. MacDonald 64k

It does look like CBP2 is an HGNC symbol, not a protein ID though. ``` > z <- select(ws, "CPB2", c("gene_names","xref_geneid","xref_ensemb…

Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor by arina • 0

Hi Omer, Unfortunately I don't have an answer to your issue, but I am facing a very similar problem after integrating datasets that were …

Answer: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by James W. MacDonald 64k

I don't know what you mean by 'cDNA value'. That could mean any number of things, I suppose, particularly if you don't know what cDNA is (p…

Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a by Guido Hooiveld ★ 3.8k

What did you try yourselves? Again, please show your code....!! For KEGG-based analysis you can make use of the convenience functions `enr…

Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by Basti ▴ 740

The image is blurred, but you need to follow ATpoint advice and restart the entire analysis using a clean environment.

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A: DSS understanding delta option and posterior probability

Comment: Ensembl down???

Answer: How should I run ssGSEA Hallmark Enrichment Analysis?

Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default

Comment: Problem loading HDF5Array in R 4.3.2

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