Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
genomes
•
reset
0
votes
0
replies
340
views
Job:
Bioinformatics Research Associate in Transcriptomics, Epigenomics and Multi-omics
genomes
5 months ago
JP Carter
▴ 40
0
votes
0
replies
336
views
Job:
Bioinformatics Research Associate, Genomics and Genetics
genomes
Genetics
5 months ago
JP Carter
▴ 40
1
vote
1
reply
400
views
MSc student
genomes
updated 15 months ago by
Basti
▴ 770 • written 15 months ago by
Deeplaxmi
• 0
0
votes
2
replies
2.5k
views
How to get the rsID of 4 million SNPA
ensembldb
SNP
SNPData
genomes
written 2.2 years ago by
Weiqiong
• 0
0
votes
0
replies
825
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics
genomes
R
MultipleSequenceAlignment
Bioconductor
2.7 years ago
K.
• 0
1
vote
0
replies
1.4k
views
Job:
Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job
computational biology
genomes
pathways
machine learning
Job
6.5 years ago
bulfin.triona
▴ 10
0
votes
0
replies
962
views
How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
bioconductor
annotation
rtracklayer
genomes
homo.sapiens
6.8 years ago
sivabala76
• 0
0
votes
5
replies
1.4k
views
Extracting all possible annotations between two genomic coordinates
genomes
7.2 years ago
KB
▴ 50
0
votes
0
replies
1.1k
views
vizualization of mutations
genomes
SNP
7.6 years ago
Bogdan
▴ 670
0
votes
0
replies
1.7k
views
Job:
Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer
sequencing
genetics
genomes
diagnostic
Job
7.6 years ago
dtlabmskcc
• 0
1
vote
1
reply
1.6k
views
GenomeViz
Proteomics
genomes
Proteomics
genomes
updated 8.2 years ago by
xianxiu
• 0 • written 19.2 years ago by
Rohit Ghai
▴ 80
0
votes
1
reply
1.2k
views
Request: Add Macaca fascicularis genome to BSgenome
bsgenome
genomes
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
amy.klegarth
• 0
0
votes
0
replies
1.5k
views
Job:
Harvard Medical School: Postdoctoral Opportunity
genomes
Job
9.5 years ago
Doe, Aimee
▴ 40
0
votes
8
replies
2.8k
views
Best practices to find intersection among variants
VariantAnnotation
genomes
VariantAnnotation
VariantAnnotation
genomes
VariantAnnotation
updated 9.7 years ago by
Julian Gehring
★ 1.3k • written 9.7 years ago by
Marco Blanchette
▴ 220
2
votes
3
replies
5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap
genomes
HapMap
genomes
9.8 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.5k
views
Elephant shark genome
Biostrings
genomes
Biostrings
genomes
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
Guest User
★ 13k
0
votes
1
reply
2.0k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment
GO
Cancer
BSgenome
BSgenome
Rsamtools
genomes
MEDIPS
Alignment
GO
Cancer
updated 10.0 years ago by
Lukas Chavez
▴ 570 • written 10.0 years ago by
Vining, Kelly
▴ 220
0
votes
1
reply
1.5k
views
GOseq with ce6
GO
Yeast
Organism
goseq
genomes
GO
Yeast
Organism
goseq
genomes
updated 10.0 years ago by
Nadia Davidson
▴ 310 • written 10.0 years ago by
François Lefebvre
▴ 50
0
votes
0
replies
1.5k
views
Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer
BSgenome
BSgenome
genomes
Cancer
BSgenome
BSgenome
genomes
10.0 years ago
Hervé Pagès
16k
0
votes
1
reply
1.7k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment
GO
Cancer
BSgenome
BSgenome
Rsamtools
genomes
MEDIPS
Alignment
GO
Cancer
updated 10.1 years ago by
Lukas Chavez
▴ 570 • written 10.1 years ago by
Vining, Kelly
▴ 220
0
votes
5
replies
1.9k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO
BSgenome
BSgenome
Rsamtools
genomes
MEDIPS
GO
BSgenome
BSgenome
Rsamtools
genomes
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
Vining, Kelly
▴ 220
0
votes
3
replies
1.9k
views
Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation
GO
topGO
genomes
Annotation
GO
topGO
genomes
10.3 years ago
Guest User
★ 13k
0
votes
1
reply
1.6k
views
makeTranscriptDbFromUCSC() error
genomes
genomes
10.3 years ago
Chris Cabanski
▴ 30
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
Thomas Sandmann
▴ 30
0
votes
1
reply
2.3k
views
Pairwise Alignment on Large Protein Sequence Data Set
Alignment
genomes
Alignment
genomes
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Gviz and Leishmania genomes
rtracklayer
genomes
Gviz
rtracklayer
genomes
Gviz
10.4 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
1.8k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
genomes
QuasR
BSgenome
convert
BSgenome
genomes
QuasR
10.5 years ago
Michael Stadler
▴ 350
0
votes
1
reply
1.6k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO
TranscriptDb
goseq
genomes
GO
TranscriptDb
goseq
genomes
updated 10.5 years ago by
Marc Carlson
★ 7.2k • written 10.5 years ago by
刘鹏飞
▴ 80
0
votes
1
reply
1.5k
views
Lifting over a bam file with Rsamtools and GenomicRanges
GenomicRanges
genomes
GenomicRanges
genomes
updated 10.6 years ago by
Michael Lawrence
★ 11k • written 10.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
SnpStats - STRING_ELT() error and Fst
genomes
genomes
10.6 years ago
Voke AO
▴ 760
0
votes
1
reply
1.3k
views
Working with non-type strain annotation
Proteomics
GO
genomes
Proteomics
GO
genomes
updated 10.9 years ago by
Marc Carlson
★ 7.2k • written 10.9 years ago by
Thomas Lin Pedersen
▴ 70
0
votes
8
replies
3.1k
views
QuasR: how to use an indexed reference genome?
BSgenome
BSgenome
genomes
QuasR
BSgenome
BSgenome
genomes
QuasR
updated 10.9 years ago by
Michael Stadler
▴ 350 • written 10.9 years ago by
Paul Shannon
▴ 750
0
votes
2
replies
1.6k
views
QuasR special case alignment
Alignment
genomes
QuasR
Alignment
genomes
QuasR
updated 11.0 years ago by
Ugo Borello
▴ 340 • written 11.0 years ago by
Michael Stadler
▴ 350
0
votes
6
replies
1.6k
views
coverage on very large ReadGappedAlignmentsObject
Coverage
genomes
Coverage
genomes
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Stefanie
▴ 360
0
votes
1
reply
1.9k
views
Help needed! What wrong with VariantAnnotation and TCGA vcfs
VariantAnnotation
genomes
VariantAnnotation
VariantAnnotation
genomes
VariantAnnotation
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
ying chen
▴ 340
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish
PolyPhen
SIFT
affy
genomes
zebrafish
PolyPhen
SIFT
affy
genomes
11.0 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
1.4k
views
Biostatistician position in London
Cancer
genomes
Cancer
genomes
11.0 years ago
Kathi Zarnack
▴ 110
0
votes
2
replies
1.5k
views
Limit on number of sequence files for forging a BSgenome
GO
Cancer
BSgenome
BSgenome
genomes
GO
Cancer
BSgenome
BSgenome
genomes
11.1 years ago
Hervé Pagès
16k
3
votes
4
replies
1.2k
views
Limit on number of sequence files for forging a BSgenome
BSgenome
BSgenome
genomes
BSgenome
BSgenome
genomes
updated 11.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.1 years ago by
Marco Blanchette
▴ 220
0
votes
2
replies
993
views
Expected value of finding a sequence (Tim Smith)
genomes
genomes
updated 11.1 years ago by
Alvaro J. González
▴ 10 • written 11.1 years ago by
Alvaro J. González
▴ 80
0
votes
0
replies
1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
11.2 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
1.2k
views
Useful information about Ensembl release 70 mart databases
genomes
genomes
11.2 years ago
Thomas Maurel
▴ 800
0
votes
3
replies
1.3k
views
VCF predictCoding(...) providing inconsistent results?
genomes
genomes
11.3 years ago
Murat Tasan
▴ 70
0
votes
3
replies
2.3k
views
seqlevels in VCF objects
BSgenome
BSgenome
genomes
BSgenome
BSgenome
genomes
updated 11.3 years ago by
Valerie Obenchain
★ 6.8k • written 11.3 years ago by
Murat Tasan
▴ 70
0
votes
2
replies
1.2k
views
Granges averaging
genomes
genomes
updated 11.5 years ago by
Hervé Pagès
16k • written 11.6 years ago by
Yannick Wurm
▴ 40
0
votes
2
replies
1.5k
views
VariantAnnotation: readVcf on nonmodel organism
Organism
genomes
Organism
genomes
updated 11.6 years ago by
Valerie Obenchain
★ 6.8k • written 11.6 years ago by
Yannick Wurm
▴ 40
0
votes
2
replies
1.6k
views
Building custom genome in MeDIPS
BSgenome
BSgenome
genomes
MEDIPS
BSgenome
BSgenome
genomes
MEDIPS
updated 11.6 years ago by
James W. MacDonald
65k • written 11.6 years ago by
Yan He
▴ 10
0
votes
0
replies
1.1k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
11.6 years ago
Martin Morgan
25k
0
votes
1
reply
963
views
How to use cutome reference genome?
BSgenome
BSgenome
genomes
MEDIPS
BSgenome
BSgenome
genomes
MEDIPS
updated 11.6 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
Job: Research Associate in Bioinformatics, Cambridge, UK
Sequencing
genomes
Sequencing
genomes
11.7 years ago
Krys Kelly
▴ 270
50 results • Page
1 of 1
Recent ...
Replies
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 20
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Locations
• All
UPF, Barcelona, Spain,
4 minutes ago
Netherlands,
6 minutes ago
France,
8 minutes ago
United States,
9 minutes ago
Egypt,
10 minutes ago
Traffic: 813 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6