Bioconductor Pics

Showing : pics • reset

votes

859

views

PICS PICS

updated 11.4 years ago by Dan Tenenbaum ★ 8.2k • written 11.5 years ago by Swaroopa Muppiri ▴ 20

votes

replies

1.0k

views

GO PICS GO PICS

updated 11.9 years ago by Arnaud Droit ▴ 20 • written 11.9 years ago by Julie Zhu ★ 4.3k

votes

1.1k

views

GenomicRanges PICS GenomicRanges PICS

updated 12.1 years ago by Hervé Pagès 16k • written 12.1 years ago by Frederic Fournier ▴ 10

votes

replies

972

views

convert PICS convert PICS

updated 12.4 years ago by Valerie Obenchain ★ 6.8k • written 12.4 years ago by Samuel Wuest ▴ 330

votes

replies

753

views

Cancer PICS Cancer PICS

13.1 years ago Hamid Bolouri ▴ 90

votes

replies

838

views

PICS PICS

15.3 years ago Karly Faith ▴ 10

votes

replies

796

views

Cancer gcrma PICS Cancer gcrma PICS

17.3 years ago Benjamin Otto ▴ 830

7 results • Page 1 of 1

Recent ...

Replies

Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10

Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …

Votes

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar

Comment: DiffBind: dba.plotProfile(profiles)

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

Normalisation of data using DESeq2 with multi-groups

Awards • All