Bioconductor Pileup

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359

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Pysam pileup Rsamtools RNASeq

7 months ago Xinqi • 0

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381

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Rsamtools pileup

10 months ago romain.lannes • 0

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432

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Rsamtools pileup

12 months ago alexandr.gopanenko ▴ 50

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471

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Rsamtools pileup

15 months ago JoeMG • 0

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751

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Rsamtools pileup insertion deletion

3.7 years ago madsheilskov ▴ 10

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2.2k

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Rsamtools pileup number of reads

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by mgray ▴ 10

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1.0k

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pileup rsamtools

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Jeremy Leipzig ▴ 70

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1.3k

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rsamtools pileup

7.6 years ago oscar puig • 0

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1.1k

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Rsamtools GAlignments pileup

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by jesper.gadin ▴ 10

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rsamtools pileup

8.0 years ago TimothéeFlutre ▴ 80

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1.4k

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rsamtools pileup

8.3 years ago komal.rathi ▴ 120

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2.4k

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pileup rsamtools bam genomicalignments

updated 8.9 years ago by Nathaniel Hayden ▴ 180 • written 8.9 years ago by Sam Buckberry • 0

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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

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biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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