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pileup
•
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0
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319
views
Pysam pileup and Rsamtools pileup output discrepancy
Pysam
pileup
Rsamtools
RNASeq
6 months ago
Xinqi
• 0
0
votes
0
replies
357
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools
pileup
9 months ago
romain.lannes
• 0
0
votes
0
replies
412
views
How to speed up pileup from Rsamtools?
Rsamtools
pileup
11 months ago
alexandr.gopanenko
▴ 50
0
votes
0
replies
430
views
Rsamtools pileup help
Rsamtools
pileup
14 months ago
JoeMG
• 0
0
votes
0
replies
726
views
How to get sequence size of insertion/deletion in sam file pileup (e.g. using Rsamtools)
Rsamtools
pileup
insertion
deletion
3.6 years ago
madsheilskov
▴ 10
1
vote
6
replies
2.1k
views
Rsamtools pileup function
Rsamtools
pileup
number of reads
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
mgray
▴ 10
7
votes
2
replies
1.0k
views
is the Rsamtools::pileup example broken?
pileup
rsamtools
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Jeremy Leipzig
▴ 70
0
votes
4
replies
1.3k
views
pileup function not found (Rsamtools)
rsamtools
pileup
7.5 years ago
oscar puig
• 0
2
votes
1
reply
1.0k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools
GAlignments
pileup
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
jesper.gadin
▴ 10
1
vote
6
replies
2.4k
views
different results between Rsamtools::pileup and samtools depth
rsamtools
pileup
7.9 years ago
TimothéeFlutre
▴ 80
0
votes
3
replies
1.4k
views
Rsamtools PileupParam set minimum depth to zero
rsamtools
pileup
8.2 years ago
komal.rathi
▴ 120
4
votes
4
replies
2.4k
views
Perform a pileup on the last nucleotides of each read with variable length reads
pileup
rsamtools
bam
genomicalignments
updated 8.8 years ago by
Nathaniel Hayden
▴ 180 • written 8.9 years ago by
Sam Buckberry
• 0
12 results • Page
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Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
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by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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