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pileup
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0
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1.2k
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Pysam pileup and Rsamtools pileup output discrepancy
Pysam
pileup
Rsamtools
RNASeq
2.4 years ago
Xinqi
• 0
0
votes
0
replies
815
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools
pileup
2.6 years ago
romain.lannes
• 0
0
votes
0
replies
990
views
How to speed up pileup from Rsamtools?
Rsamtools
pileup
2.8 years ago
alexandr.gopanenko
▴ 50
0
votes
0
replies
926
views
Rsamtools pileup help
Rsamtools
pileup
3.0 years ago
JoeMG
• 0
0
votes
0
replies
1.2k
views
How to get sequence size of insertion/deletion in sam file pileup (e.g. using Rsamtools)
Rsamtools
pileup
insertion
deletion
5.5 years ago
madsheilskov
▴ 10
1
vote
6
replies
3.6k
views
Rsamtools pileup function
Rsamtools
pileup
number of reads
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
mgray
▴ 10
7
votes
2
replies
1.5k
views
is the Rsamtools::pileup example broken?
pileup
rsamtools
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
Jeremy Leipzig
▴ 70
0
votes
4
replies
1.7k
views
pileup function not found (Rsamtools)
rsamtools
pileup
9.4 years ago
oscar puig
• 0
2
votes
1
reply
1.4k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools
GAlignments
pileup
updated 9.7 years ago by
Martin Morgan
25k • written 9.8 years ago by
jesper.gadin
▴ 10
1
vote
6
replies
3.2k
views
different results between Rsamtools::pileup and samtools depth
rsamtools
pileup
9.8 years ago
TimothéeFlutre
▴ 80
0
votes
3
replies
2.0k
views
Rsamtools PileupParam set minimum depth to zero
rsamtools
pileup
10.0 years ago
komal.rathi
▴ 120
4
votes
4
replies
3.2k
views
Perform a pileup on the last nucleotides of each read with variable length reads
pileup
rsamtools
bam
genomicalignments
updated 10.7 years ago by
Nathaniel Hayden
▴ 180 • written 10.7 years ago by
Sam Buckberry
• 0
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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