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pileup
•
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1
vote
6
replies
2.4k
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different results between Rsamtools::pileup and samtools depth
rsamtools
pileup
8.0 years ago
TimothéeFlutre
▴ 80
1
vote
6
replies
2.2k
views
Rsamtools pileup function
Rsamtools
pileup
number of reads
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
mgray
▴ 10
4
votes
4
replies
2.4k
views
Perform a pileup on the last nucleotides of each read with variable length reads
pileup
rsamtools
bam
genomicalignments
updated 8.9 years ago by
Nathaniel Hayden
▴ 180 • written 8.9 years ago by
Sam Buckberry
• 0
0
votes
4
replies
1.3k
views
pileup function not found (Rsamtools)
rsamtools
pileup
7.6 years ago
oscar puig
• 0
0
votes
3
replies
1.4k
views
Rsamtools PileupParam set minimum depth to zero
rsamtools
pileup
8.3 years ago
komal.rathi
▴ 120
7
votes
2
replies
1.0k
views
is the Rsamtools::pileup example broken?
pileup
rsamtools
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
Jeremy Leipzig
▴ 70
2
votes
1
reply
1.1k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools
GAlignments
pileup
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
jesper.gadin
▴ 10
0
votes
0
replies
381
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools
pileup
10 months ago
romain.lannes
• 0
0
votes
0
replies
432
views
How to speed up pileup from Rsamtools?
Rsamtools
pileup
12 months ago
alexandr.gopanenko
▴ 50
0
votes
0
replies
359
views
Pysam pileup and Rsamtools pileup output discrepancy
Pysam
pileup
Rsamtools
RNASeq
7 months ago
Xinqi
• 0
0
votes
0
replies
751
views
How to get sequence size of insertion/deletion in sam file pileup (e.g. using Rsamtools)
Rsamtools
pileup
insertion
deletion
3.7 years ago
madsheilskov
▴ 10
0
votes
0
replies
471
views
Rsamtools pileup help
Rsamtools
pileup
15 months ago
JoeMG
• 0
12 results • Page
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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