Bioconductor Pileup

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2.4k

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rsamtools pileup

8.0 years ago TimothéeFlutre ▴ 80

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2.2k

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Rsamtools pileup number of reads

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by mgray ▴ 10

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2.4k

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pileup rsamtools bam genomicalignments

updated 8.9 years ago by Nathaniel Hayden ▴ 180 • written 8.9 years ago by Sam Buckberry • 0

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1.3k

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rsamtools pileup

7.6 years ago oscar puig • 0

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1.4k

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rsamtools pileup

8.3 years ago komal.rathi ▴ 120

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1.0k

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pileup rsamtools

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Jeremy Leipzig ▴ 70

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1.1k

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Rsamtools GAlignments pileup

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by jesper.gadin ▴ 10

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381

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Rsamtools pileup

10 months ago romain.lannes • 0

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432

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Rsamtools pileup

12 months ago alexandr.gopanenko ▴ 50

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359

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Pysam pileup Rsamtools RNASeq

7 months ago Xinqi • 0

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751

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Rsamtools pileup insertion deletion

3.7 years ago madsheilskov ▴ 10

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470

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Rsamtools pileup

15 months ago JoeMG • 0

12 results • Page 1 of 1

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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180