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Re: funnction in LIMMA
limma
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limma
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19.1 years ago
Gordon Smyth
45k
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6
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920
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
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miRNA
Biophysics
Homo sapiens
biomaRt
PING
updated 13.0 years ago by
michael watson IAH-C
★ 3.4k • written 13.0 years ago by
mauede@alice.it
▴ 870
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1
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777
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question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 12.1 years ago by
Ping Ma
▴ 10 • written 12.1 years ago by
Hervé Pagès
15k
0
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2
replies
667
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DNS problem with bioconductor.org
Cancer
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Cancer
PING
updated 10.8 years ago by
David Henderson
▴ 20 • written 10.8 years ago by
Philip Lijnzaad
▴ 160
0
votes
1
reply
522
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[Bioc-devel] DNS problem with bioconductor.org
Cancer
PING
Cancer
PING
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
Philip Lijnzaad
▴ 160
0
votes
7
replies
1.2k
views
Excessive memory requirements of PING or bug?
PING
PING
updated 10.1 years ago by
Xuekui Zhang
▴ 20 • written 10.1 years ago by
Lars Hennig
▴ 10
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Comment: Why Negative value from GSVA
by
Yang Shi
• 0
Thanks for your detailed reply sir! Sorry for the typo 'Row'. Actually, the raw count data is from TCGA database (STAR - Count). The Log2(F…
Comment: ComplexHeatmap - Heatmap function within a for loop
by
krushnach80
• 0
I'm trying to save list of heatmaps after doing this hm_lst<-cmplx_ht(list_of_files,metadata) The to save I tried something like thi…
Answer: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet
by
James W. MacDonald
60k
When a function is deprecated, that usually doesn't mean that the author/maintainer just changed the name of a function. That's always poss…
Answer: Cannot Install WGCNA
by
shepherl
3.1k
If you first install preprocessCore and then try again? `BiocManager::install("preprocessCore")` `BiocManager::install("WGCNA")` …
Answer: Why Negative value from GSVA
by
Robert Castelo
★ 2.9k
hi, i guess when you say that you are using "RNA-Seq Row Count data" you mean "RNA-Seq raw count data" in the sense that the count data is …
Votes
Answer: Why Negative value from GSVA
Mapping patient dataset onto control dataset
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
XVector installation fails because zlib.h is not found
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