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Re: funnction in LIMMA
limma
PING
limma
PING
20.9 years ago
Gordon Smyth
50k
0
votes
6
replies
1.5k
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
PING
miRNA
Biophysics
Homo sapiens
biomaRt
PING
updated 14.8 years ago by
michael watson IAH-C
★ 3.4k • written 14.8 years ago by
mauede@alice.it
▴ 870
0
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1
reply
1.2k
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question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 13.9 years ago by
Ping Ma
▴ 10 • written 13.9 years ago by
Hervé Pagès
16k
0
votes
2
replies
996
views
DNS problem with bioconductor.org
Cancer
PING
Cancer
PING
updated 12.6 years ago by
David Henderson
▴ 20 • written 12.6 years ago by
Philip Lijnzaad
▴ 160
0
votes
1
reply
763
views
[Bioc-devel] DNS problem with bioconductor.org
Cancer
PING
Cancer
PING
updated 12.6 years ago by
Dan Tenenbaum
★ 8.2k • written 12.6 years ago by
Philip Lijnzaad
▴ 160
0
votes
7
replies
1.7k
views
Excessive memory requirements of PING or bug?
PING
PING
updated 11.9 years ago by
Xuekui Zhang
▴ 20 • written 12.0 years ago by
Lars Hennig
▴ 10
6 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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