Showing : plgem • reset
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calculating PLGEM p-values...
PLGEM
10.6 years ago pstopka • 0
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PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
13.3 years ago Norman Pavelka ▴ 140
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Fwd: FW: plgem
plgem plgem
updated 13.6 years ago by ▴ 20 • written 13.6 years ago by ▴ 140
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Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
14.3 years ago Norman Pavelka ▴ 140
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Fwd: Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
14.3 years ago Norman Pavelka ▴ 140
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Fwd: plgem for spectral counts
limma plgem limma plgem
14.3 years ago Norman Pavelka ▴ 140
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plgem for spectral counts
limma plgem limma plgem
14.3 years ago Norman Pavelka ▴ 140
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limma for spectral counts
limma plgem limma plgem
14.3 years ago Amin Moghaddasi ▴ 130
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Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray Proteomics limma plgem Microarray Proteomics limma plgem
updated 15.2 years ago by ▴ 120 • written 15.2 years ago by ▴ 70
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replicable of *PLGEM*
plgem cycle plgem cycle
15.3 years ago Pavelka, Norman ▴ 70
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'plgem' package bug fix
plgem plgem
15.5 years ago Pavelka, Norman ▴ 70
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Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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Commentator to James W. MacDonald 68k
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