Bioconductor Plgem

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PLGEM

10.4 years ago pstopka • 0

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miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem

13.1 years ago Norman Pavelka ▴ 140

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plgem plgem

updated 13.4 years ago by Olli Kannaste ▴ 20 • written 13.4 years ago by Norman Pavelka ▴ 140

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Biobase plgem Biobase plgem

14.1 years ago Norman Pavelka ▴ 140

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Biobase plgem Biobase plgem

14.1 years ago Norman Pavelka ▴ 140

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limma plgem limma plgem

14.1 years ago Norman Pavelka ▴ 140

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limma plgem limma plgem

14.1 years ago Norman Pavelka ▴ 140

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limma plgem limma plgem

14.1 years ago Amin Moghaddasi ▴ 130

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Microarray Proteomics limma plgem Microarray Proteomics limma plgem

updated 15.0 years ago by Yolande Tra ▴ 120 • written 15.0 years ago by Pavelka, Norman ▴ 70

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1.2k

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plgem cycle plgem cycle

15.1 years ago Pavelka, Norman ▴ 70

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1.1k

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plgem plgem

15.2 years ago Pavelka, Norman ▴ 70

11 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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