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polyester
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7
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1.8k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester
rnaseq
updated 7.9 years ago by
jmfu
▴ 10 • written 7.9 years ago by
aditya892
• 0
2
votes
1
reply
1.4k
views
polyester: adding noise to RNASeq counts?
rnaseq
polyester
updated 7.8 years ago by
Alyssa Frazee
▴ 210 • written 7.8 years ago by
krishna312
• 0
0
votes
2
replies
1.4k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.4 years ago by
Alyssa Frazee
▴ 210 • written 6.4 years ago by
fa.gholizadeh89
• 0
0
votes
1
reply
420
views
polyester biases
polyester
updated 11 months ago by
Michael Love
41k • written 12 months ago by
Seongwoo Han
▴ 10
0
votes
2
replies
1.5k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
Endre Sebestyén
▴ 70
1
vote
0
replies
599
views
Polyester's simulate_experiment man pages / vignette description
polyester
4.5 years ago
Michael Love
41k
0
votes
0
replies
603
views
Polyester - simulate_experiment_countmat with gtf
polyester
4.1 years ago
liorglic
▴ 10
0
votes
0
replies
1.1k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
6.7 years ago
sseo2
• 0
0
votes
1
reply
673
views
Error message
polyester
updated 3.2 years ago by
shepherl
3.9k • written 3.2 years ago by
avaniknejad686
• 0
0
votes
0
replies
450
views
polyester running question
polyester
18 months ago
Seongwoo Han
▴ 10
0
votes
0
replies
554
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.1 years ago by
catalina.gonzalez-gomez
• 0
0
votes
0
replies
976
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
6.4 years ago
fa.gholizadeh89
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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