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polyester
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7
replies
1.8k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester
rnaseq
updated 8.0 years ago by
jmfu
▴ 10 • written 8.0 years ago by
aditya892
• 0
0
votes
2
replies
1.6k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
Endre Sebestyén
▴ 70
0
votes
2
replies
1.4k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.4 years ago by
Alyssa Frazee
▴ 210 • written 6.4 years ago by
fa.gholizadeh89
• 0
2
votes
1
reply
1.4k
views
polyester: adding noise to RNASeq counts?
rnaseq
polyester
updated 7.9 years ago by
Alyssa Frazee
▴ 210 • written 7.9 years ago by
krishna312
• 0
0
votes
0
replies
1.1k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
6.8 years ago
sseo2
• 0
0
votes
0
replies
985
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
6.4 years ago
fa.gholizadeh89
• 0
0
votes
1
reply
684
views
Error message
polyester
updated 3.3 years ago by
shepherl
3.9k • written 3.3 years ago by
avaniknejad686
• 0
0
votes
0
replies
613
views
Polyester - simulate_experiment_countmat with gtf
polyester
4.1 years ago
liorglic
▴ 10
1
vote
0
replies
609
views
Polyester's simulate_experiment man pages / vignette description
polyester
4.6 years ago
Michael Love
42k
0
votes
0
replies
565
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.1 years ago by
Michael Love
42k • written 3.1 years ago by
catalina.gonzalez-gomez
• 0
0
votes
0
replies
463
views
polyester running question
polyester
18 months ago
Seongwoo Han
▴ 10
0
votes
1
reply
430
views
polyester biases
polyester
updated 12 months ago by
Michael Love
42k • written 12 months ago by
Seongwoo Han
▴ 10
12 results • Page
1 of 1
Recent ...
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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Mike Smith
★ 6.5k
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mohammedtoufiq91
▴ 10
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Gordon Smyth
50k
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bas_work
▴ 30
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landenshanie
▴ 40
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