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error on heatmap
PROMISE metagenomeSeq PROMISE metagenomeSeq
updated 11.1 years ago by ▴ 280 • written 11.1 years ago by ★ 13k
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subsetting SummarizedExperiments - a proposal (or a hack?)
Cancer IRanges GenomicRanges PROMISE Cancer IRanges GenomicRanges PROMISE
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ★ 1.6k
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getting an error with ggbio
PROMISE PROMISE
12.2 years ago Abhishek Pratap ▴ 410
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Generating GEO submission files from beadarray summary data
beadarray lumi PROMISE beadarray lumi PROMISE
updated 12.5 years ago by ★ 1.1k • written 12.5 years ago by ★ 4.2k
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Error, while using produceGEOSampleInfoTemplate
beadarray lumi PROMISE beadarray lumi PROMISE
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ▴ 350
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!SPAM: Christmas gifft idea!
PROMISE PROMISE
16.3 years ago Earnhardt Tako ▴ 10
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gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
17.5 years ago Yan Zhang ▴ 130
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Looking for extra Income? Please Read.
PROMISE PROMISE
17.7 years ago hardware.inc505@gmail.com ▴ 10
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Biocore response to Affymetrix data format changes
Microarray GO Network Cancer cdf affy PROMISE Microarray GO Network Cancer cdf affy
21.7 years ago Kulp, David ▴ 20
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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
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Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
Comment: Error in retrieving clinical data
What is the cheapest day to fly on American Airlines? {Ask_Expert}
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