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Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess

updated 11.1 years ago by Solanki, Anisha ▴ 60 • written 11.1 years ago by Antti Honkela ▴ 50

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impute PROcess mmgmos puma impute PROcess mmgmos puma

11.1 years ago Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

updated 11.1 years ago by Antti Honkela ▴ 50 • written 11.1 years ago by Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

11.1 years ago Solanki, Anisha ▴ 60

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Microarray Normalization limma marray puma Microarray Normalization limma marray puma

updated 4.1 years ago by Gordon Smyth 52k • written 11.9 years ago by Ellen Sebastian ▴ 20

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puma DEXSeq puma DEXSeq

12.0 years ago Natasha ▴ 440

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puma puma

14.4 years ago Alberto Goldoni ▴ 420

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cdf GEOquery puma cdf GEOquery puma

14.4 years ago Manca Marco PATH ▴ 340

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Microarray Annotation Normalization vsn bgx puma Microarray Annotation Normalization vsn

updated 14.8 years ago by Benilton Carvalho ★ 4.3k • written 14.8 years ago by Rainer Tischler ▴ 60

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miRNA GO limma puma miRNA GO limma puma

updated 16.9 years ago by Deepayan Sarkar ▴ 220 • written 16.9 years ago by Paul Geeleher ★ 1.3k

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puma puma

updated 16.9 years ago by Richard Pearson ▴ 390 • written 16.9 years ago by Paul Geeleher ★ 1.3k

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puma puma

17.1 years ago Paul Geeleher ★ 1.3k

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puma puma

updated 17.1 years ago by Richard Pearson ▴ 390 • written 17.1 years ago by Paul Geeleher ★ 1.3k

13 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

A: use tximport's countsFromAbundance when using DESeq2

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