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Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess

updated 10.9 years ago by Solanki, Anisha ▴ 60 • written 10.9 years ago by Antti Honkela ▴ 50

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impute PROcess mmgmos puma impute PROcess mmgmos puma

10.9 years ago Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

updated 10.9 years ago by Antti Honkela ▴ 50 • written 10.9 years ago by Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

10.9 years ago Solanki, Anisha ▴ 60

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Microarray Normalization limma marray puma Microarray Normalization limma marray puma

updated 3.9 years ago by Gordon Smyth 52k • written 11.7 years ago by Ellen Sebastian ▴ 20

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puma DEXSeq puma DEXSeq

11.7 years ago Natasha ▴ 440

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puma puma

14.2 years ago Alberto Goldoni ▴ 420

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cdf GEOquery puma cdf GEOquery puma

14.2 years ago Manca Marco PATH ▴ 340

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Microarray Annotation Normalization vsn bgx puma Microarray Annotation Normalization vsn

updated 14.5 years ago by Benilton Carvalho ★ 4.3k • written 14.5 years ago by Rainer Tischler ▴ 60

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miRNA GO limma puma miRNA GO limma puma

updated 16.6 years ago by Deepayan Sarkar ▴ 220 • written 16.6 years ago by Paul Geeleher ★ 1.3k

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puma puma

updated 16.6 years ago by Richard Pearson ▴ 390 • written 16.7 years ago by Paul Geeleher ★ 1.3k

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puma puma

16.8 years ago Paul Geeleher ★ 1.3k

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puma puma

updated 16.8 years ago by Richard Pearson ▴ 390 • written 16.8 years ago by Paul Geeleher ★ 1.3k

13 results • Page 1 of 1

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Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…

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A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Answer: nightmare to make custom txdb for genomes from ToxoDB

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