Bioconductor Puma

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Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess

updated 10.8 years ago by Solanki, Anisha ▴ 60 • written 10.8 years ago by Antti Honkela ▴ 50

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impute PROcess mmgmos puma impute PROcess mmgmos puma

10.8 years ago Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

updated 10.8 years ago by Antti Honkela ▴ 50 • written 10.8 years ago by Solanki, Anisha ▴ 60

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PROcess mmgmos puma PROcess mmgmos puma

10.8 years ago Solanki, Anisha ▴ 60

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1.3k

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Microarray Normalization limma marray puma Microarray Normalization limma marray puma

updated 3.8 years ago by Gordon Smyth 51k • written 11.6 years ago by Ellen Sebastian ▴ 20

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puma DEXSeq puma DEXSeq

11.6 years ago Natasha ▴ 440

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puma puma

14.1 years ago Alberto Goldoni ▴ 420

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cdf GEOquery puma cdf GEOquery puma

14.1 years ago Manca Marco PATH ▴ 340

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Microarray Annotation Normalization vsn bgx puma Microarray Annotation Normalization vsn

updated 14.4 years ago by Benilton Carvalho ★ 4.3k • written 14.4 years ago by Rainer Tischler ▴ 60

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1.8k

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miRNA GO limma puma miRNA GO limma puma

updated 16.5 years ago by Deepayan Sarkar ▴ 220 • written 16.5 years ago by Paul Geeleher ★ 1.3k

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968

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puma puma

updated 16.6 years ago by Richard Pearson ▴ 390 • written 16.6 years ago by Paul Geeleher ★ 1.3k

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919

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puma puma

16.7 years ago Paul Geeleher ★ 1.3k

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1.8k

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puma puma

updated 16.7 years ago by Richard Pearson ▴ 390 • written 16.7 years ago by Paul Geeleher ★ 1.3k

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Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

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Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

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