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puma
•
reset
0
votes
6
replies
1.7k
views
Puma question
cdf
GEOquery
puma
cdf
GEOquery
puma
13.6 years ago
Manca Marco PATH
▴ 340
0
votes
1
reply
879
views
Screeplot in puma package
puma
puma
updated 16.0 years ago by
Richard Pearson
▴ 390 • written 16.0 years ago by
Paul Geeleher
★ 1.3k
0
votes
6
replies
1.7k
views
Analyze miRNA experiment in Bioconductor
miRNA
GO
limma
puma
miRNA
GO
limma
puma
updated 16.0 years ago by
Deepayan Sarkar
▴ 220 • written 16.0 years ago by
Paul Geeleher
★ 1.3k
0
votes
4
replies
1.8k
views
gc-rma and vsn normalization for rat microarray data
Microarray
Annotation
Normalization
vsn
bgx
puma
Microarray
Annotation
Normalization
vsn
updated 13.9 years ago by
Benilton Carvalho
★ 4.3k • written 13.9 years ago by
Rainer Tischler
▴ 60
0
votes
10
replies
1.6k
views
Running Pumacomb on both cores of dual-core machine
puma
puma
updated 16.2 years ago by
Richard Pearson
▴ 390 • written 16.2 years ago by
Paul Geeleher
★ 1.3k
0
votes
4
replies
3.8k
views
*** caught segfault *** ....cause 'invalid permissions' with PUMA pachage
puma
puma
13.6 years ago
Alberto Goldoni
▴ 420
0
votes
1
reply
1.2k
views
Unexpected output from Limma background subtraction & Normalization
Microarray
Normalization
limma
marray
puma
Microarray
Normalization
limma
marray
puma
updated 3.3 years ago by
Gordon Smyth
50k • written 11.0 years ago by
Ellen Sebastian
▴ 20
0
votes
1
reply
932
views
Tigre Package question 2
PROcess
mmgmos
puma
PROcess
mmgmos
puma
updated 10.2 years ago by
Antti Honkela
▴ 50 • written 10.2 years ago by
Solanki, Anisha
▴ 60
0
votes
2
replies
1.3k
views
Tigre Package question 3
Microarray
impute
PROcess
convert
mmgmos
puma
tigre
trigger
Microarray
impute
PROcess
updated 10.2 years ago by
Solanki, Anisha
▴ 60 • written 10.2 years ago by
Antti Honkela
▴ 50
0
votes
0
replies
832
views
Running Pumacomb on both cores of dual-core machine
puma
puma
16.2 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
821
views
FW: Tigre Package question 2
PROcess
mmgmos
puma
PROcess
mmgmos
puma
10.2 years ago
Solanki, Anisha
▴ 60
0
votes
0
replies
1.0k
views
DEXSeq html report error
puma
DEXSeq
puma
DEXSeq
11.1 years ago
Natasha
▴ 440
0
votes
0
replies
973
views
FW: Tigre Package question 3
impute
PROcess
mmgmos
puma
impute
PROcess
mmgmos
puma
10.2 years ago
Solanki, Anisha
▴ 60
13 results • Page
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Recent ...
Replies
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Ask yourself the question how a gene that is exactly the same everywhere adds anything to any analysis. Heatmaps usually take DEGs to infer…
Votes
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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