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pvca
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pvca error (Error in Data$variables : $ operator is invalid for atomic vectors)
pvca
biobase
updated 8.7 years ago by
erflynn
• 0 • written 9.0 years ago by
a.riedel
• 0
0
votes
3
replies
1.8k
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edgeR GLM to adjust for batch effect
edgeR
pvca
edgeR
pvca
updated 10.1 years ago by
Ryan C. Thompson
★ 7.9k • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
747
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Interpretation of PVCA result and what to correct for
pvca
batch effect
batch effect correction
5.5 years ago
Sebastian Hesse
▴ 70
0
votes
1
reply
574
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Help needed to run PVCA
pvca
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
jyotsna.rao
• 0
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Votes
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
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