Showing : biobase • reset
3
votes
4
replies
143
views
R session aborted: prcomp
Biobase stats
updated 13 days ago by 2.7k • written 19 days ago by • 0
0
votes
0
replies
40
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
21 days ago Daniel Brewer ▴ 90
0
votes
0
replies
91
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3 months ago Daniel Brewer ▴ 90
0
votes
3
replies
143
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools ReadAffy Biobase phenoData affy
updated 3 months ago by 56k • written 3 months ago by • 0
0
votes
0
replies
70
views
Job: Postdoctoral Associate position to study hematopoietic neoplasms using advanced single-cell multi-omics technologies
Biobase
3 months ago NamLab • 0
0
votes
0
replies
82
views
Job: Data analyst position to study hematopoietic neoplasms via single-cell multi-omics
Biobase
3 months ago NamLab • 0
0
votes
1
reply
91
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 4 months ago by 56k • written 4 months ago by • 0
1
vote
0
replies
90
views
Job: Computational Biologist at Denali Therapeutics
Biobase biomarker neuroscience biotech
4 months ago sandmann.t ▴ 70
1
vote
3
replies
185
views
After the Support Site upgrade: how can I order posts by creation (not reply) time?
SupportSiteUI Biobase
5 months ago Axel Klenk ▴ 940
4
votes
8
replies
179
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 11 months ago by 42k • written 11 months ago by • 0
0
votes
0
replies
70
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error biobase Iranges ArrayExpressHTS
13 months ago Ed Siefker ▴ 230
0
votes
3
replies
339
views
When applying rma to featureset get error: 'package' must be of length 1
oligo biobase GEOquery
updated 17 months ago by 56k • written 17 months ago by • 0
3
votes
3
replies
369
views
Is there a way to save and open an expression set?
biobase
updated 17 months ago by 2.7k • written 17 months ago by • 0
0
votes
5
replies
609
views
Install a custom CDF file
makecdf RMA annotation biobase GEOquery
updated 21 months ago by 56k • written 21 months ago by • 0
2
votes
4
replies
1.1k
views
error: namespace Loading DESeq2
deseq2 error namespace biobase
updated 2.3 years ago by 56k • written 2.3 years ago by • 0
0
votes
2
replies
365
views
GEOQuery bug, NCBI or package?
geoquery ncbi geo biobase
2.4 years ago cschot3 • 0
4
votes
8
replies
1.2k
views
ALL dataset, correct syntax using the exprs call?
ALL bioconductor biobase exprs
updated 2.7 years ago by 25k • written 2.7 years ago by • 0
2
votes
2
replies
442
views
aaMap Import "Not Available"
bioconductor biobase aaMap
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by • 0
5
votes
7
replies
529
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 2.7 years ago by 25k • written 2.7 years ago by ▴ 20
2
votes
2
replies
2.2k
views
AnnotatedDataFrame is not a defined class
annotatedDataFrame R Biobase
6.4 years ago • updated 2.7 years ago nonCodingGene ▴ 10
2
votes
10
replies
598
views
Am I on the right tracks with a 3 factor design in Limma?
r limma design matrix biobase
updated 2.8 years ago by 42k • written 2.8 years ago by • 0
2
votes
2
replies
453
views
Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
microarray biobase
2.8 years ago charlesgwellem ▴ 10
8
votes
2
replies
1.1k
views
exprs function - clash with dplyr
exprs dplyr Biobase
2.9 years ago Wolfgang Huber 13k
1
vote
3
replies
562
views
Boxplot and Identification of DEG
limma biobase geoquery
updated 3.4 years ago by ★ 26k • written 3.4 years ago by ▴ 20
2
votes
3
replies
961
views
GEOquery problem in calling the function in Rstudio
R software error biobase geoquery
updated 3.7 years ago by 56k • written 3.7 years ago by • 0
4
votes
3
replies
565
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 3.8 years ago by 56k • written 3.8 years ago by • 0
0
votes
1
reply
578
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 3.9 years ago by 56k • written 3.9 years ago by ▴ 60
1
vote
2
replies
1.7k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 4.5 years ago by 25k • written 4.5 years ago by ★ 2.9k
6
votes
13
replies
861
views
Comparison of Column of AnnotatedDataFrame
biobase AnnotatedDataFrame
4.5 years ago Dario Strbenac ★ 1.5k
0
votes
4
replies
586
views
`exprs<-` Allows setting assay data matrix size that doesn't match se.exprs
Biobase
updated 4.6 years ago by 6.5k • written 4.7 years ago by • 0
1
vote
2
replies
1.3k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 5.1 years ago by 42k • written 5.1 years ago by • 0
2
votes
2
replies
5.1k
views
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R
updated 5.2 years ago by ▴ 750 • written 5.2 years ago by • 0
0
votes
2
replies
812
views
Help with annotating eset (Affy Arrays)
Biobase annotationdbi affy microarray
5.4 years ago rumroses12 • 0
2
votes
5
replies
2.7k
views
How to use t.test to select best features out of multiple features?
microarray biobase feature selection t.test R
updated 5.6 years ago by ▴ 780 • written 5.6 years ago by ▴ 10
1
vote
3
replies
1.8k
views
How to use expression set object to select genes using different gene selection methods
microarray biobase geoquery
updated 5.6 years ago by ▴ 780 • written 5.6 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Excluding columns of phenoData of ExpressionSet Data in R
microarray biobase expresiondataset r
5.6 years ago floodking • 0
0
votes
1
reply
4.7k
views
pvca error (Error in Data$variables : $ operator is invalid for atomic vectors)
pvca biobase
updated 5.7 years ago by • 0 • written 6.0 years ago by • 0
4
votes
6
replies
3.2k
views
Proper way to build phenoData object?
limma affy biobase
updated 6.2 years ago by ★ 2.9k • written 6.2 years ago by • 0
1
vote
3
replies
1.5k
views
Error installing Biobase on R 3.1.2
biobase
updated 6.2 years ago by ★ 1.9k • written 6.2 years ago by • 0
0
votes
2
replies
631
views
How to Represent Data from Various Different Assays in a Single Class?
biobase
updated 6.3 years ago by 1.1k • written 6.3 years ago by ▴ 20
0
votes
3
replies
872
views
conflict in names between phenoData and protocolData during RMA
biobase
6.4 years ago bin.shan • 0
0
votes
0
replies
878
views
easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
7.0 years ago Guest User ★ 12k
0
votes
2
replies
1.3k
views
make.cdf.package Error in copySubstitute
GO cdf Biobase affy GO cdf Biobase affy
updated 7.1 years ago by 56k • written 7.1 years ago by ▴ 30
0
votes
0
replies
510
views
Problem with the oligo package for nimblegen analysis
Biobase Biobase
7.5 years ago William Oldham ▴ 10
0
votes
1
reply
1.1k
views
Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA Normalization GO Biobase affy convert oligo miRNA Normalization GO Biobase affy
updated 7.5 years ago by ▴ 190 • written 7.5 years ago by 56k
0
votes
2
replies
1.8k
views
Biobase - Error: ExpressionSet
Microarray Annotation GO ExperimentData Biobase Microarray Annotation GO ExperimentData
updated 7.5 years ago by 1.5k • written 7.5 years ago by ▴ 50
0
votes
5
replies
711
views
multiple annotations with get()?
Biobase annotate convert Biobase annotate convert
updated 7.5 years ago by 21k • written 7.5 years ago by ▴ 230
0
votes
4
replies
16k
views
Unable to find an inherited method for function ‘exprs’
Biobase GEOquery virtualArray Biobase GEOquery virtualArray
updated 7.7 years ago by 13k • written 7.7 years ago by ▴ 210
0
votes
2
replies
1.8k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 30
0
votes
2
replies
1.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 40
277 results • Page 1 of 6
Recent ...
Replies
Answer: DepMap copy number by Laurent Gatto 1.5k
Hi Danny - sorry for the delay in answering, I hadn't set `depmap` as a tag yet. Yes, that bug has been fixed in the devel version.
Answer: High fold change reported for comparison of samples with zero values in all samp by James W. MacDonald 56k
The universal recommendation is to remove all genes with consistently low (or all zero) expression values prior to doing any modeling. It i…
Comment: Sample quality weights for RNA-seq by Naomi Altman ★ 6.0k
Thanks Michael. I'll try that. (Limma folks, I'd still love to hear from you.)
Answer: Installation error if message implemented in .Rprofile by Mike Smith ★ 4.9k
A similar issue has been reported recently for rhdf5filters (https://github.com/grimbough/rhdf5filters/issues/11) and rhdf5 (https://github…
Comment: Couldn't load org.Hs.eg.db by Xulei Huo • 0
That does not work, i have tried it.
Votes
Answer: TargetsFile. Where it is?
Answer: TargetsFile. Where it is?
Comment: TargetsFile. Where it is?
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
Awards • All
Scholar to James W. MacDonald 56k
Popular Question to Assa Yeroslaviz ★ 1.5k
Teacher to Martin Morgan 25k
Scholar to Michael Love 32k
Teacher to Naomi Altman ★ 6.0k
Locations • All
United States, just now
United States, 19 minutes ago
Belgium, 20 minutes ago
EMBL Heidelberg / de.NBI, 23 minutes ago
United States, 23 minutes ago
Traffic: 466 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6