Showing : biobase • reset
0
votes
2
replies
127
views
Gene expression in R
limma edgeR Biobase GeneExpression
11 days ago • updated 8 days ago sogol.bouyeh • 0
3
votes
4
replies
388
views
R session aborted: prcomp
Biobase stats
updated 5 months ago by 3.4k • written 5 months ago by • 0
0
votes
0
replies
150
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
5 months ago Daniel Brewer ▴ 90
0
votes
0
replies
200
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
9 months ago Daniel Brewer ▴ 90
0
votes
3
replies
312
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools ReadAffy Biobase phenoData affy
updated 8 months ago by 58k • written 9 months ago by • 0
0
votes
0
replies
169
views
Job: Postdoctoral Associate position to study hematopoietic neoplasms using advanced single-cell multi-omics technologies
Biobase
9 months ago NamLab • 0
0
votes
0
replies
175
views
Job: Data analyst position to study hematopoietic neoplasms via single-cell multi-omics
Biobase
9 months ago NamLab • 0
0
votes
1
reply
179
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 9 months ago by 58k • written 9 months ago by • 0
1
vote
0
replies
178
views
Job: Computational Biologist at Denali Therapeutics
Biobase biomarker neuroscience biotech
9 months ago sandmann.t ▴ 70
1
vote
3
replies
309
views
After the Support Site upgrade: how can I order posts by creation (not reply) time?
SupportSiteUI Biobase
11 months ago • updated 10 months ago Axel Klenk ▴ 980
4
votes
8
replies
413
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 16 months ago by 43k • written 16 months ago by • 0
0
votes
0
replies
146
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error biobase Iranges ArrayExpressHTS
18 months ago Ed Siefker ▴ 230
0
votes
3
replies
534
views
When applying rma to featureset get error: 'package' must be of length 1
oligo biobase GEOquery
updated 23 months ago by 58k • written 23 months ago by ▴ 20
3
votes
3
replies
593
views
Is there a way to save and open an expression set?
biobase
updated 23 months ago by 3.4k • written 23 months ago by ▴ 20
0
votes
5
replies
837
views
Install a custom CDF file
makecdf RMA annotation biobase GEOquery
updated 2.2 years ago by 58k • written 2.2 years ago by • 0
2
votes
4
replies
1.3k
views
error: namespace Loading DESeq2
deseq2 error namespace biobase
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
0
votes
2
replies
480
views
GEOQuery bug, NCBI or package?
geoquery ncbi geo biobase
2.8 years ago cschot3 • 0
4
votes
8
replies
1.3k
views
ALL dataset, correct syntax using the exprs call?
ALL bioconductor biobase exprs
updated 3.1 years ago by 25k • written 3.1 years ago by • 0
2
votes
2
replies
545
views
aaMap Import "Not Available"
bioconductor biobase aaMap
updated 3.1 years ago by ▴ 20 • written 3.1 years ago by • 0
5
votes
7
replies
632
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 20
2
votes
2
replies
2.4k
views
AnnotatedDataFrame is not a defined class
annotatedDataFrame R Biobase
6.9 years ago • updated 3.2 years ago nonCodingGene ▴ 10
2
votes
10
replies
718
views
Am I on the right tracks with a 3 factor design in Limma?
r limma design matrix biobase
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
2
votes
2
replies
696
views
Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
microarray biobase
3.2 years ago charlesgwellem ▴ 10
8
votes
2
replies
1.4k
views
exprs function - clash with dplyr
exprs dplyr Biobase
3.3 years ago Wolfgang Huber 13k
1
vote
3
replies
686
views
Boxplot and Identification of DEG
limma biobase geoquery
updated 3.8 years ago by ★ 27k • written 3.8 years ago by ▴ 30
2
votes
3
replies
1.1k
views
GEOquery problem in calling the function in Rstudio
R software error biobase geoquery
updated 4.2 years ago by 58k • written 4.2 years ago by • 0
4
votes
3
replies
643
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 4.2 years ago by 58k • written 4.2 years ago by • 0
0
votes
1
reply
640
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 4.3 years ago by 58k • written 4.3 years ago by ▴ 60
1
vote
2
replies
1.8k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 4.9 years ago by 25k • written 4.9 years ago by ★ 3.0k
6
votes
13
replies
1.1k
views
Comparison of Column of AnnotatedDataFrame
biobase AnnotatedDataFrame
5.0 years ago Dario Strbenac ★ 1.5k
0
votes
4
replies
668
views
`exprs<-` Allows setting assay data matrix size that doesn't match se.exprs
Biobase
updated 5.1 years ago by 6.5k • written 5.1 years ago by • 0
1
vote
2
replies
1.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
2
votes
2
replies
5.4k
views
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R
updated 5.6 years ago by ▴ 760 • written 5.7 years ago by • 0
0
votes
2
replies
905
views
Help with annotating eset (Affy Arrays)
Biobase annotationdbi affy microarray
5.9 years ago rumroses12 • 0
2
votes
5
replies
2.9k
views
How to use t.test to select best features out of multiple features?
microarray biobase feature selection t.test R
updated 6.0 years ago by ▴ 780 • written 6.0 years ago by ▴ 10
1
vote
3
replies
1.9k
views
How to use expression set object to select genes using different gene selection methods
microarray biobase geoquery
updated 6.0 years ago by ▴ 780 • written 6.0 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Excluding columns of phenoData of ExpressionSet Data in R
microarray biobase expresiondataset r
6.0 years ago floodking • 0
0
votes
1
reply
4.9k
views
pvca error (Error in Data$variables : $ operator is invalid for atomic vectors)
pvca biobase
updated 6.1 years ago by • 0 • written 6.4 years ago by • 0
4
votes
6
replies
3.5k
views
Proper way to build phenoData object?
limma affy biobase
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by • 0
1
vote
3
replies
1.6k
views
Error installing Biobase on R 3.1.2
biobase
updated 6.6 years ago by ★ 1.9k • written 6.6 years ago by • 0
0
votes
2
replies
717
views
How to Represent Data from Various Different Assays in a Single Class?
biobase
updated 6.8 years ago by 1.1k • written 6.8 years ago by ▴ 20
0
votes
3
replies
945
views
conflict in names between phenoData and protocolData during RMA
biobase
6.9 years ago bin.shan • 0
0
votes
0
replies
943
views
easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
7.4 years ago Guest User ★ 12k
0
votes
2
replies
1.4k
views
make.cdf.package Error in copySubstitute
GO cdf Biobase affy GO cdf Biobase affy
updated 7.5 years ago by 58k • written 7.5 years ago by ▴ 30
0
votes
0
replies
570
views
Problem with the oligo package for nimblegen analysis
Biobase Biobase
7.9 years ago William Oldham ▴ 10
0
votes
1
reply
1.2k
views
Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA Normalization GO Biobase affy convert oligo miRNA Normalization GO Biobase affy
updated 7.9 years ago by ▴ 190 • written 7.9 years ago by 58k
0
votes
2
replies
2.0k
views
Biobase - Error: ExpressionSet
Microarray Annotation GO ExperimentData Biobase Microarray Annotation GO ExperimentData
updated 7.9 years ago by 1.5k • written 7.9 years ago by ▴ 50
0
votes
5
replies
811
views
multiple annotations with get()?
Biobase annotate convert Biobase annotate convert
updated 7.9 years ago by 21k • written 7.9 years ago by ▴ 230
0
votes
4
replies
16k
views
Unable to find an inherited method for function ‘exprs’
Biobase GEOquery virtualArray Biobase GEOquery virtualArray
updated 8.1 years ago by 13k • written 8.1 years ago by ▴ 210
0
votes
2
replies
1.9k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 30
50 results • Page 1 of 1
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Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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Scholar to Jiang, Mike ★ 1.3k
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